Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0255
(699 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces ... 82 6e-17
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 31 0.21
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 28 1.5
SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 2.0
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 27 3.4
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 27 3.4
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 26 4.5
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 26 6.0
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 7.9
SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.9
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 7.9
>SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 274
Score = 82.2 bits (194), Expect = 6e-17
Identities = 39/74 (52%), Positives = 52/74 (70%)
Frame = +2
Query: 263 IFGVGSGSTVVYAVQRLAERVESEKLKVTCIPTSFQAKQLIIKHGLNLGELETNPNIDVT 442
+ G+GSGSTVVY V+RL + + V IPT FQ+KQLI+ +GL LG+ + PN+DV+
Sbjct: 35 VIGIGSGSTVVYVVERLLTKPGVDS--VVFIPTGFQSKQLIVNNGLRLGDPDCYPNVDVS 92
Query: 443 IDGADEVDSNMTLI 484
DGADEVD N+ I
Sbjct: 93 FDGADEVDDNLQCI 106
Score = 57.6 bits (133), Expect = 2e-09
Identities = 27/53 (50%), Positives = 38/53 (71%)
Frame = +1
Query: 493 GRVSVKEKIIASCSKKLIVIADYTKDSVKLGDRYKKGVPIEVIPMAYVPIKKQ 651
G +EK+IA +K+L+++AD K+S LG+ +KKGVPIEV+PMAY I Q
Sbjct: 110 GACLFQEKLIAFLAKRLVIVADSRKNSHVLGEYWKKGVPIEVMPMAYASILPQ 162
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 30.7 bits (66), Expect = 0.21
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 146 KQTNKSSFLHTKYDVEDVFRTSEASRGVSSC--RSICYDNCIFGVG 277
K+TNK+SF H+ Y++ + + VS +CY C++ VG
Sbjct: 778 KETNKTSFWHSSYNLFNRQYHVDMPDNVSDLPQTRLCYGACVYNVG 823
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 323 VESEKLKVTCIPTSFQAKQLIIKHGLNL 406
V+ + LKV C T F + ++++ GLNL
Sbjct: 211 VQPKHLKVACATTDFSMQNVLLQIGLNL 238
>SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 158
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 498 PPPPLISVMFESTSSAPSI 442
PPPP+I+ FE T+S+ S+
Sbjct: 12 PPPPIINKPFEQTNSSASL 30
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = +2
Query: 197 VFRTSEASRGVSSCRSICYDNCIFGVGSGSTVVYA 301
++++ +G++ SIC +NC + G V A
Sbjct: 63 IYKSQRFEKGIAEPTSICVNNCAYNYAPGPESVIA 97
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 26.6 bits (56), Expect = 3.4
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -2
Query: 296 KQQWIRYRHQKCNYRNKL 243
K++W R+R + CNY +L
Sbjct: 9 KRRWNRFRREMCNYSKRL 26
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 528 LFKEAYCYCGLYKRFCKTW 584
LF ++ Y GL RFCK W
Sbjct: 291 LFLKSIHYIGLCSRFCKQW 309
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 291 TVDPLPTPKMQLS*QIDRQLDTPRLASLVLK 199
TV+ LPTP + D+QLD + ++ +K
Sbjct: 968 TVEELPTPVSPANSNNDKQLDESKFQAIAMK 998
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +3
Query: 510 RKNYCILFKEAYCYCGLYKRFCKTW 584
RKN +L + +CY GL ++ W
Sbjct: 1103 RKNIALLLRGFFCYYGLTTQYSFDW 1127
>SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 166
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 690 LLSLISPPYNDMILFFNRNIGHR 622
L +++PP ND I F NR+ G +
Sbjct: 87 LSKVLTPPTNDEIKFVNRHTGSK 109
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +2
Query: 233 SCRSICYDNCIFGVGSGSTV 292
+C + CYD+ I+G +G+ V
Sbjct: 995 ACGNACYDSSIYGCSNGALV 1014
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,552,298
Number of Sequences: 5004
Number of extensions: 49308
Number of successful extensions: 152
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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