Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0255
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0550 - 4099485-4099659,4100295-4100728,4101783-4102187           57   2e-08
04_03_0280 + 13854758-13855585                                         51   8e-07
08_01_0570 - 5073138-5073410,5075386-5075530,5075561-5075754           29   3.5  
04_04_1273 - 32307273-32307569,32307659-32307791,32307874-323081...    29   4.7  
01_05_0286 - 20403748-20403828,20404493-20404693,20404774-204049...    28   6.2  

>07_01_0550 - 4099485-4099659,4100295-4100728,4101783-4102187
          Length = 337

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
 Frame = +2

Query: 263 IFGVGSGSTVVYAVQRLAERVESEKLK-VTCIPTSFQAKQLIIKHGLNLGELETNPNIDV 439
           + G+G+GST  +AV  +   + S KL  +  +PTS +  +     G+ L  L+ +P ID+
Sbjct: 69  VLGLGTGSTAAFAVAEIGALLASGKLSGIVGVPTSKRTFEQAQSLGIPLSTLDDHPRIDL 128

Query: 440 TIDGADEVDSNMTLI 484
            IDGADEVD ++ L+
Sbjct: 129 AIDGADEVDPDLNLV 143


>04_03_0280 + 13854758-13855585
          Length = 275

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
 Frame = +2

Query: 269 GVGSGSTVVYAVQRLAERVESEKLK-VTCIPTSFQAKQLIIKHGLNLGELETNPNIDVTI 445
           G+G+GST  +A+ RL + + S +L  V  +PTS + +    + G+ +  L     ID++I
Sbjct: 56  GLGTGSTAAHALDRLGDLLRSGELAAVAGVPTSLKTEAHAARVGIPMLPLGEAGGIDLSI 115

Query: 446 DGADEVDSNMTLI 484
           DGADEVD  + L+
Sbjct: 116 DGADEVDPELNLV 128



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +1

Query: 490 RGRVSVKEKIIASCSKKLIVIADYTKDSVKLGDRYKKGVPIEVIP 624
           RG   ++EK+I     + +VI D +K   +LG      VP+EV+P
Sbjct: 131 RGGSLLREKMIEGSGGRFVVIVDESKLVPRLG--CTGAVPVEVVP 173


>08_01_0570 - 5073138-5073410,5075386-5075530,5075561-5075754
          Length = 203

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -1

Query: 525 CXXXXXNRHPPPPLISVMFESTSSAPSIVTSIFGFVSSSPRLSPCLIISC 376
           C      R PPPP  S  + + S     +    G  S +PRLS  L ++C
Sbjct: 15  CGSQASTRPPPPPSKSPSYINPSVPDIFIELCIGRRSPAPRLSTTLPLAC 64


>04_04_1273 -
           32307273-32307569,32307659-32307791,32307874-32308105,
           32308220-32308436,32308594-32308718,32309416-32310757
          Length = 781

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +2

Query: 254 DNCIFGVGSGSTVVYAVQRLAERVESEKLKVTCIPTSFQ---AKQLIIKHGLNLGEL 415
           +NC+ G G  STV   VQ     V  ++LK + +    +   A+++ +  GL+ G L
Sbjct: 475 ENCLIGEGGFSTVYKGVQSDGRMVAVKRLKQSALTNKGKKDFAREVAVMAGLHHGSL 531


>01_05_0286 -
           20403748-20403828,20404493-20404693,20404774-20404955,
           20405022-20405187,20405318-20405506,20409155-20409238,
           20409482-20409550,20409638-20409700,20410327-20410425,
           20410882-20410983,20411237-20411341,20412259-20412372
          Length = 484

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
 Frame = +2

Query: 149 QTNKSSFLHTKYDVEDVFRTSEASRGVSSCRSICYDNCIFGVGSGSTVVYAVQRLAERVE 328
           + +KSS +    +V+D+ R SE S+   SC  I  D  +  + S S +  + QR+     
Sbjct: 150 ECSKSSQIRKDKNVQDITRDSEESKQSESC--IPTDKNVQDIASDSEIKTSEQRVDSTTH 207

Query: 329 SEKLKVTCIPTSFQAK--QLIIKHGLNLGELETN 424
           +   K +    +   K   LI + G  + E++ N
Sbjct: 208 ATSHKDSPETETLTRKLIMLIEQQGKEMKEMKQN 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,309,181
Number of Sequences: 37544
Number of extensions: 280772
Number of successful extensions: 816
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)