Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0255
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5422| Best HMM Match : No HMM Matches (HMM E-Value=.)               54   8e-08
SB_1960| Best HMM Match : Transposase_21 (HMM E-Value=8.1e-05)         30   2.1  
SB_15413| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  

>SB_5422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 25/39 (64%), Positives = 32/39 (82%)
 Frame = +2

Query: 368 QAKQLIIKHGLNLGELETNPNIDVTIDGADEVDSNMTLI 484
           QA+QLI ++ L L +LE NP +DV IDGADEVD+N+TLI
Sbjct: 37  QAQQLITENKLVLSDLERNPELDVAIDGADEVDANLTLI 75


>SB_1960| Best HMM Match : Transposase_21 (HMM E-Value=8.1e-05)
          Length = 350

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 598 KGVPIEVIPMAYVPIKKQ-NHIIVWR*NQ 681
           K VP+  IP  Y  I K  NH ++W  NQ
Sbjct: 4   KSVPVFSIPSCYTAITKSANHFVIWSLNQ 32


>SB_15413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 167 FLHTKYDVEDVFRTSEASRGVSSCRSICYDNCIFGVG 277
           FL  ++ V    R ++ S GV SC ++  DNC   VG
Sbjct: 404 FLSERFQVAS--RVAQLSEGVGSCVAVTSDNCRLSVG 438


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,398,658
Number of Sequences: 59808
Number of extensions: 350325
Number of successful extensions: 1000
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)