Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0255
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10438-7|AAA19091.1|  251|Caenorhabditis elegans Hypothetical pr...    80   2e-15
AL110484-28|CAB54395.2|  419|Caenorhabditis elegans Hypothetical...    29   2.4  
Z93377-5|CAB07579.1|  195|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z50859-8|CAN99723.1|  549|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z50859-7|CAH04735.1|  574|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z50859-4|CAA90730.1|  538|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z50859-3|CAA90728.1|  632|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z93387-1|CAB07651.1|  376|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>U10438-7|AAA19091.1|  251|Caenorhabditis elegans Hypothetical
           protein B0280.3 protein.
          Length = 251

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 38/76 (50%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
 Frame = +2

Query: 260 CIFGVGSGSTVVYAVQRLAERVESEKLK-VTCIPTSFQAKQLIIKHGLNLGELETNPNID 436
           C  GVGSGSTV Y V+ L +  ++  LK + C+PTSF  KQ +I+ GL + +L+++P +D
Sbjct: 34  CRLGVGSGSTVKYLVEYLKQGFQNGSLKDIICVPTSFLTKQWLIESGLPVSDLDSHPELD 93

Query: 437 VTIDGADEVDSNMTLI 484
           V IDGADEVD   T I
Sbjct: 94  VCIDGADEVDGQFTCI 109



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 26/50 (52%), Positives = 33/50 (66%)
 Frame = +1

Query: 493 GRVSVKEKIIASCSKKLIVIADYTKDSVKLGDRYKKGVPIEVIPMAYVPI 642
           G    +EKI+ + +K   VIADY KDS  LGDRY   VPIEV+P+A  P+
Sbjct: 113 GGCLAQEKIVQTAAKNFYVIADYLKDSKHLGDRY-PNVPIEVLPLAAQPL 161


>AL110484-28|CAB54395.2|  419|Caenorhabditis elegans Hypothetical
           protein Y38E10A.4 protein.
          Length = 419

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 133 SYYLSSISVYNNILRLF*FTTQYSLHYTDVY*SKLT 26
           SY LS+   YN +L+   F+T  +L Y  VY  + T
Sbjct: 330 SYLLSTTGAYNILLKFTDFSTNLNLDYVTVYDGETT 365


>Z93377-5|CAB07579.1|  195|Caenorhabditis elegans Hypothetical
           protein F13A7.9 protein.
          Length = 195

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +1

Query: 514 KIIASCSKKLIVIADYTKDSVKLGDRYKKGVPIEVIPMAYVPIKK 648
           K+++   ++  + A   K S+ L D   +  P +  PMA +P++K
Sbjct: 24  KLVSEDKQEFTISAKAAKKSIVLNDVISRRAPEDSAPMAPIPVEK 68


>Z50859-8|CAN99723.1|  549|Caenorhabditis elegans Hypothetical
           protein T26C5.3d protein.
          Length = 549

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 216 QVAAYQAVDQFVTIIAFLVSVADPLLFMQYKDSLNALN 329
           Q+A Y     FV+++AF+  ++DP +   Y   LN LN
Sbjct: 415 QLATYS---MFVSMMAFIAQISDPRIGGTYMTMLNTLN 449


>Z50859-7|CAH04735.1|  574|Caenorhabditis elegans Hypothetical
           protein T26C5.3c protein.
          Length = 574

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 216 QVAAYQAVDQFVTIIAFLVSVADPLLFMQYKDSLNALN 329
           Q+A Y     FV+++AF+  ++DP +   Y   LN LN
Sbjct: 440 QLATYS---MFVSMMAFIAQISDPRIGGTYMTMLNTLN 474


>Z50859-4|CAA90730.1|  538|Caenorhabditis elegans Hypothetical
           protein T26C5.3b protein.
          Length = 538

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 216 QVAAYQAVDQFVTIIAFLVSVADPLLFMQYKDSLNALN 329
           Q+A Y     FV+++AF+  ++DP +   Y   LN LN
Sbjct: 404 QLATYS---MFVSMMAFIAQISDPRIGGTYMTMLNTLN 438


>Z50859-3|CAA90728.1|  632|Caenorhabditis elegans Hypothetical
           protein T26C5.3a protein.
          Length = 632

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 216 QVAAYQAVDQFVTIIAFLVSVADPLLFMQYKDSLNALN 329
           Q+A Y     FV+++AF+  ++DP +   Y   LN LN
Sbjct: 498 QLATYS---MFVSMMAFIAQISDPRIGGTYMTMLNTLN 532


>Z93387-1|CAB07651.1|  376|Caenorhabditis elegans Hypothetical
           protein T02E9.1 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 501 HPPPPLISVMFESTSSAPSIVTSIFGFVSSSPRLSPCLIIS 379
           +PPPPL+   F  T + P  +  +FG + ++  LS    I+
Sbjct: 10  YPPPPLVGASFAKT-AIPYSICFVFGTLGNTAVLSYVFFIT 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,001,244
Number of Sequences: 27780
Number of extensions: 274897
Number of successful extensions: 712
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)