Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0254
(546 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 139 3e-34
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 133 1e-32
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 85 9e-18
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 64 1e-11
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 57 2e-09
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 56 5e-09
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 55 8e-09
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 55 8e-09
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 54 2e-08
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 52 7e-08
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 51 1e-07
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 50 2e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 50 2e-07
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 45 8e-06
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 44 1e-05
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 43 3e-05
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 43 3e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 40 3e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 39 6e-04
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 38 7e-04
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 38 7e-04
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 37 0.002
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 33 0.021
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 33 0.036
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 30 0.26
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 1.0
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 27 1.8
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 1.8
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 2.4
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi... 27 2.4
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 3.2
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 26 3.2
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 26 4.2
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 4.2
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 4.2
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 25 5.5
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 7.3
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 25 9.6
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 9.6
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 139 bits (336), Expect = 3e-34
Identities = 64/83 (77%), Positives = 76/83 (91%)
Frame = +2
Query: 260 RDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 439
RDV+AQAQSGTG+TATFSIS+LQ IDTS+++CQALILAPTRELAQQIQKVV+ALGD +N
Sbjct: 57 RDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNV 116
Query: 440 KCHACIGGTNVREDIRQLEXGVH 508
+CHACIGGT VR+D+ L+ GVH
Sbjct: 117 ECHACIGGTLVRDDMAALQAGVH 139
Score = 82.2 bits (194), Expect = 5e-17
Identities = 34/50 (68%), Positives = 45/50 (90%)
Frame = +3
Query: 105 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI 254
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP +
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPIL 54
Score = 27.9 bits (59), Expect = 1.0
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +1
Query: 508 LVVGTPGRVYDMI 546
+VVGTPGRV+DMI
Sbjct: 140 VVVGTPGRVHDMI 152
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 133 bits (322), Expect = 1e-32
Identities = 62/85 (72%), Positives = 74/85 (87%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
+GRDVIAQAQSGTG+TATFSI ILQ ID S+R+ QALIL+PTRELA QIQ VV+ALGDH+
Sbjct: 57 KGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHM 116
Query: 434 NAKCHACIGGTNVREDIRQLEXGVH 508
N +CHACIGGT+V DI++L+ G H
Sbjct: 117 NVQCHACIGGTSVGNDIKKLDYGQH 141
Score = 58.8 bits (136), Expect = 5e-10
Identities = 29/52 (55%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Frame = +3
Query: 105 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 257
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ K
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICK 57
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 84.6 bits (200), Expect = 9e-18
Identities = 41/84 (48%), Positives = 55/84 (65%)
Frame = +2
Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
GRD++A+A++GTG+TA F I L+ +DT + Q LIL PTRELA Q +V LG H+N
Sbjct: 81 GRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMN 140
Query: 437 AKCHACIGGTNVREDIRQLEXGVH 508
K GGT +R+DI +L VH
Sbjct: 141 VKVMVTTGGTTLRDDIIRLNDTVH 164
Score = 42.3 bits (95), Expect = 4e-05
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +3
Query: 57 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 224
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 225 IQQRAI 242
IQ+ +I
Sbjct: 70 IQEESI 75
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 64.5 bits (150), Expect = 1e-11
Identities = 29/61 (47%), Positives = 45/61 (73%)
Frame = +2
Query: 260 RDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 439
R++I Q+QSGTG+TA F++++L +D S+ + QA+ LAP+RELA+QI VV +G +
Sbjct: 154 RNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 213
Query: 440 K 442
K
Sbjct: 214 K 214
Score = 43.6 bits (98), Expect = 2e-05
Identities = 17/33 (51%), Positives = 28/33 (84%)
Frame = +3
Query: 144 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
V++F+++ LK ELL+GIY+ F+KPS IQ++A+
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 56.8 bits (131), Expect = 2e-09
Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
+GR+ I A++G+G+TA F++ I++ ALIL PTRELA QI + ALG +L
Sbjct: 43 EGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANL 102
Query: 434 NAKCHACIGGTN-VREDI 484
N K +GG + +R+ I
Sbjct: 103 NLKHALIVGGMDMIRQSI 120
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 55.6 bits (128), Expect = 5e-09
Identities = 27/71 (38%), Positives = 45/71 (63%)
Frame = +2
Query: 260 RDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 439
RDVI AQ+G+G+TA F++ ++Q + + A++LAPTRELA QI + A+G +
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGV 143
Query: 440 KCHACIGGTNV 472
+ +GG ++
Sbjct: 144 RSVVIVGGMDM 154
Score = 31.5 bits (68), Expect = 0.084
Identities = 20/78 (25%), Positives = 36/78 (46%)
Frame = +3
Query: 9 MSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLR 188
M+ S ++ +ED S N + S + D+ ++ +TF ++ + +EL
Sbjct: 1 MAPSEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCE 59
Query: 189 GIYAYGFEKPSAIQQRAI 242
GF+ P+ IQQ AI
Sbjct: 60 ACEKLGFKTPTPIQQEAI 77
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 54.8 bits (126), Expect = 8e-09
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 433
G DV+ QA+SG G+TA F +S LQ I+ E L+L TRELA QI+ +L
Sbjct: 88 GTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLP 147
Query: 434 NAKCHACIGGTNVREDI 484
+ + GG N+++D+
Sbjct: 148 DVRTAVFYGGINIKQDM 164
Score = 32.7 bits (71), Expect = 0.036
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
F D LK ELLR I GFE PS +QQ I
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCI 82
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 54.8 bits (126), Expect = 8e-09
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGQTATFSISILQLIDTSIREC--QALILAPTRELAQQIQKVVIAL 421
L +GRDV+ A++G+G+TA F I +++ + +++ +ALIL+P RELA Q KVV
Sbjct: 103 LLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDF 162
Query: 422 GDHLNAKCHACIGGTNVREDIRQL 493
+ + A +GG ++ E L
Sbjct: 163 SKGTDLRSVAIVGGVSLEEQFSLL 186
Score = 31.5 bits (68), Expect = 0.084
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
F M L + LLR I+ GF+ P+ IQ++ I
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTI 100
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 53.6 bits (123), Expect = 2e-08
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 6/79 (7%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGQTATFSISILQL------IDTSIRECQALILAPTRELAQQIQKVVI 415
+G+D++AQA++G+G+TA + I IL+L ID + R AL+L PTRELAQQ+ V+
Sbjct: 50 EGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVL- 108
Query: 416 ALGDHLNAKCHACIGGTNV 472
+ L A C I NV
Sbjct: 109 ---EKLTAFCSKHIRFINV 124
Score = 32.7 bits (71), Expect = 0.036
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 147 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
+TF D NL L R I+ FEKP+++Q I
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETI 45
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 51.6 bits (118), Expect = 7e-08
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGQTATFSISILQLIDT--SIRECQ------ALILAPTRELAQQIQ 403
L Q +D+I A++G+G+TA F I ++ I + E A++LAPTRELAQQIQ
Sbjct: 283 LLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
Query: 404 KVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVH 508
+ L +C + +GG E Q+ G H
Sbjct: 343 VEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAH 377
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 50.8 bits (116), Expect = 1e-07
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 GRDVIAQAQSGTGQTATFSISILQ--LIDTSIRECQALILAPTRELAQQIQKVVIALGDH 430
G D+I +A +G+G+T F I IL+ L + + QAL++APTRELA QI + +
Sbjct: 159 GFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPS 218
Query: 431 LNAKCHACIGGTNVREDIRQLEXGVH 508
N + + GG V++ R L H
Sbjct: 219 PNIRVMSITGGLAVQKQQRLLNKHPH 244
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 50.4 bits (115), Expect = 2e-07
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Frame = +2
Query: 257 GRDVIAQAQSGTGQTATFSISILQLI---DTSIRECQALILAPTRELAQQIQKVVIALGD 427
G+D++ A +G+G+TA F + IL+ + + + LIL PTRELA Q V +
Sbjct: 296 GKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIAS 355
Query: 428 HLNAKCHACIGGTNVREDIRQL 493
+ CIGG +++ ++L
Sbjct: 356 FTDIMVCLCIGGLSLKLQEQEL 377
Score = 31.9 bits (69), Expect = 0.063
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 150 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
+F MNL +L+G+ GFE P+ IQ + I
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTI 290
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 50.0 bits (114), Expect = 2e-07
Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGQTATFSISILQLID----TSIRECQALILAPTRELAQQIQKVVIAL 421
+GRD++ A++G+G+T F + +++ + TS+ AL+++PTRELA Q + ++ +
Sbjct: 75 KGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKI 134
Query: 422 GDHLNAKCHACIGGTNVREDIRQL 493
G + IGG N +E+ +L
Sbjct: 135 GRLHSFSAGLIIGGNNYKEEKERL 158
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 44.8 bits (101), Expect = 8e-06
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGQTATFSISILQLI--DTSIRECQ---ALILAPTRELAQQIQKV 409
A+ GRDVI A++G+G+T F + + + I ++ + A+I+ PTRELA QI +
Sbjct: 451 AITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRE 510
Query: 410 VIALGDHLNAKCHACIGGTNVREDIRQLEXG 502
LN + GG +++ I L+ G
Sbjct: 511 CKPFLKLLNIRACCAYGGAPIKDQIADLKRG 541
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 129 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
D + V ++ L + + I + G+EKP++IQ +AI
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAI 449
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 44.0 bits (99), Expect = 1e-05
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Frame = +2
Query: 257 GRDVIAQAQSGTGQTATF---SISILQLIDTSIRE-CQALILAPTRELAQQIQKVVIALG 424
GRDV+ A++G+G+T F +I +L + R +I++PTRELA QI V L
Sbjct: 126 GRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELL 185
Query: 425 DHLNAKCHACIGGTNVREDIRQLEXGVH 508
+ + IGG N R + +L GV+
Sbjct: 186 KYHHQTFGIVIGGANRRAEADKLVKGVN 213
Score = 33.1 bits (72), Expect = 0.027
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 144 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI 254
+E F D+ L E + + I GFE + IQ+R+I P +
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLL 124
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 43.2 bits (97), Expect = 3e-05
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 11/107 (10%)
Frame = +2
Query: 221 CNPATRNNALHQGRDVIAQAQSGTGQTATFSISILQLI-------DTSIRECQALILAPT 379
C PA N +D +AQ+G+G+T + + I+Q + T A+I+APT
Sbjct: 169 CLPALLNT---DDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPT 225
Query: 380 RELAQQIQKVVIALGD----HLNAKCHACIGGTNVREDIRQLEXGVH 508
REL QQI V L + H C+ IGG + + ++ GV+
Sbjct: 226 RELCQQIYNVANKLNNNPLSHWIVSCNV-IGGEKKKSEKARIRKGVN 271
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 43.2 bits (97), Expect = 3e-05
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Frame = +2
Query: 257 GRDVIAQAQSGTGQTATFSISILQLID---TSIRECQALILAPTRELAQQIQKVVIALGD 427
GRDV+ A++G+G+T F I LQ ++ + + L+++PTRELA Q + + +L
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQ 261
Query: 428 HLNAKCHACIGGTNVREDIR 487
N K GG E R
Sbjct: 262 GTNLKAVVVYGGAPKSEQAR 281
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +1
Query: 505 SLVVGTPGRVYDMI 546
S+++GTPGR+ D+I
Sbjct: 287 SVIIGTPGRLLDLI 300
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 39.5 bits (88), Expect = 3e-04
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = +2
Query: 260 RDVIAQAQSGTGQTATFSISILQLIDTSIRE-CQALILAPTRELAQQIQK 406
RD++A A +G+G+T + ILQ + + +A+I+APTREL +QI +
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYR 133
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 38.7 bits (86), Expect = 6e-04
Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 18/100 (18%)
Frame = +2
Query: 257 GRDVIAQAQSGTGQTATFSISILQL----------IDTSI----RECQA----LILAPTR 382
GRD++A AQ+G+G+TA F IL L +D R +A LILAPTR
Sbjct: 206 GRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTR 265
Query: 383 ELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXG 502
EL QI + + A GG ++R IRQ++ G
Sbjct: 266 ELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQG 305
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 38.3 bits (85), Expect = 7e-04
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGQTATFSISILQLID-TSIRECQALILAPTRELAQQIQKVVIALGDHL 433
G DV A +G+G+T ++ I I+Q + ++ + +++ PTREL Q+ K
Sbjct: 173 GGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGA 232
Query: 434 NAKCHACIGGTNVREDIRQL 493
+ A G ++R + QL
Sbjct: 233 GLQVCAWTGQKSLRHETYQL 252
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 38.3 bits (85), Expect = 7e-04
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +2
Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQA-----LILAPTRELAQQIQKVVIAL 421
GRD++ + +G+G+T ++ + + I+ L+LAPTRELA QIQ+
Sbjct: 159 GRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKF 218
Query: 422 GDHLNAKCHACIGGTNVREDIRQLEXGV 505
G + GG IR L GV
Sbjct: 219 GKSSRIRNTCVYGGVPRGPQIRDLIRGV 246
Score = 28.3 bits (60), Expect = 0.78
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 144 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRA 239
V TF++ +L+ + GFE P+ IQQ+A
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQA 152
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 36.7 bits (81), Expect = 0.002
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGQTATFSISILQLI---DTSIRECQALILAPTRELAQQIQKV 409
+ +D++ +A +G+G+T + + + DT ALI+APTRELA QI V
Sbjct: 37 KNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNV 91
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 33.5 bits (73), Expect = 0.021
Identities = 21/68 (30%), Positives = 34/68 (50%)
Frame = +2
Query: 212 KTFCNPATRNNALHQGRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELA 391
KT+ + A N L G VI + +G++ + I ILQ + + A + PT+ LA
Sbjct: 311 KTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LEDNQSTAFFVFPTKSLA 369
Query: 392 QQIQKVVI 415
Q +K +I
Sbjct: 370 QDQKKSLI 377
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 32.7 bits (71), Expect = 0.036
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Frame = +2
Query: 239 NNALHQGRDVIAQAQSGTGQTATFS-ISILQLIDTSIR----ECQALILAPTRELAQQIQ 403
N + + QA++GTG+T F ++ ++ R + ++IL+PTRELA QI
Sbjct: 70 NEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIF 129
Query: 404 KVVIALGDHLNAKCHACIGG-TNVRED 481
+ L + IGG + +RE+
Sbjct: 130 EEARKLTYGTGIRVSYAIGGNSKMREE 156
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 29.9 bits (64), Expect = 0.26
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 120 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKD 260
LDT+W V + NL+ + + I + F PS I + MP + D
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLND 230
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 117 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 209
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +3
Query: 138 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKDAMLSLKPSQELDKLLLSLY 317
++V F+DM++ GI KP + + +++ C+K+ + + P +D LL L
Sbjct: 190 EIVRLFNDMDVYMLDTPGIMTPSITKPEDMLKLSLVGCVKEGI--VHPVTVVDYLLFHLN 247
Query: 318 R 320
R
Sbjct: 248 R 248
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 319 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSS 420
D+ TNR + SSFD S P+N++G ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 94 DLREWTLGHLTPT 132
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPAP27G11.02 |||TPR repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -3
Query: 529 DLECPPPMNTXLQLANIFTDIGATNASMAFSIQVITKS 416
D+E PP LQ+AN+ GA + + + ++ ++
Sbjct: 103 DMESPPVQGIRLQMANLLASAGALHKAWSMYWDILERT 140
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 433 QVITKSYHHLLNLLGQLSCGSQDQ 362
+++ KSYH+L N QLS ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 26.2 bits (55), Expect = 3.2
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +2
Query: 239 NNALHQGRDVIAQA--QSGTGQTATFSISILQLIDTSIRECQAL 364
NN + R ++A+A +SGT + T SIS+ +++D R Q L
Sbjct: 625 NNENERARKLLARARIESGTERIWTKSISLERILDEKDRALQLL 668
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 398 IQKVVIALGDHLNAKCHACIGGTNVRED 481
++ + A+ DHL+ + CIG N+ ED
Sbjct: 134 VEMIRRAISDHLDLLNNCCIGIANLNED 161
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -3
Query: 493 QLANIFTDIGAT---NASMAFSIQVITKSYHHLLNLL 392
+L NIFT + N+ FS+ +++++Y H NLL
Sbjct: 598 KLQNIFTTLYTAWCHNSIAVFSLCLLSQNYEHAANLL 634
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 114 QGPFPEVHRNYLDPSMAHFWNPLANL 37
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 25.4 bits (53), Expect = 5.5
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 240 IMPCIKDAMLSLKPSQELDKLLLSLYRF 323
I+ CI + S +P + ++ L++L+RF
Sbjct: 824 ILTCISIPLFSFEPLSKKNRFLINLFRF 851
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 123 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKDAMLS 272
DTDWD +V + D++L+ RGI A G + + + P + ++
Sbjct: 618 DTDWDALV-SLSDLDLQN---RGIMALGARRKLLKSFQEVAPLVSSKKMN 663
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 272 R*HRVLDARHYCALLDCRRFF 210
R HR+ D R YC DC + F
Sbjct: 17 RAHRLGDPRFYCTYPDCPKSF 37
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 24.6 bits (51), Expect = 9.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 183 LRGIYAYGFEKPSAIQQRAIMPCIKDAMLSLKP 281
L G A K A A++PCIK+ M KP
Sbjct: 161 LLGSLASSSPKAVADYMAALIPCIKERMHDTKP 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,445,380
Number of Sequences: 5004
Number of extensions: 51770
Number of successful extensions: 214
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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