Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0254
(546 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 138 2e-33
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 138 4e-33
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 89 2e-18
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 79 3e-15
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 79 3e-15
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 70 1e-12
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 4e-10
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 61 5e-10
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 54 8e-08
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 53 1e-07
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 53 1e-07
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 1e-07
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 1e-07
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 53 2e-07
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 52 2e-07
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 49 3e-06
SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 7e-06
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 47 9e-06
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 42 4e-04
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 40 0.001
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 32 0.35
SB_17830| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 30 1.1
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_31593| Best HMM Match : Ribonuclease_3 (HMM E-Value=6.30024e-42) 29 3.3
SB_30812| Best HMM Match : RVT_1 (HMM E-Value=1.2e-40) 29 3.3
SB_11753| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.3
SB_24534| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.3
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) 29 3.3
SB_34297| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_15811| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_48723| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09) 28 5.7
SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2) 28 5.7
SB_23509| Best HMM Match : XET_C (HMM E-Value=3.6) 28 5.7
SB_57858| Best HMM Match : RNA_pol_A_CTD (HMM E-Value=5.7) 28 5.7
SB_44173| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_43286| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_30467| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08) 28 5.7
SB_2750| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09) 28 5.7
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 138 bits (335), Expect = 2e-33
Identities = 63/85 (74%), Positives = 77/85 (90%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
+GRDVIAQAQSGTG+TATFSIS+LQ IDT +RE QAL+L+PTRELA QIQKVV+ALGD++
Sbjct: 33 KGRDVIAQAQSGTGKTATFSISVLQAIDTQLREPQALVLSPTRELANQIQKVVLALGDYM 92
Query: 434 NAKCHACIGGTNVREDIRQLEXGVH 508
+ +CHACIGGTN+ EDIR+L+ G H
Sbjct: 93 SVQCHACIGGTNIGEDIRKLDYGQH 117
Score = 34.7 bits (76), Expect = 0.050
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +3
Query: 204 GFEKPSAIQQRAIMPCIK 257
GFEKPSAIQQRAI P +K
Sbjct: 16 GFEKPSAIQQRAIKPILK 33
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 138 bits (333), Expect = 4e-33
Identities = 68/98 (69%), Positives = 82/98 (83%), Gaps = 6/98 (6%)
Frame = +2
Query: 233 TRNNALHQGRDVIAQAQSGTGQTATFSISILQLIDTSIRE------CQALILAPTRELAQ 394
T+N+ + RDVIAQAQSGTG+TATF+ISILQ IDT+ ++ CQAL+LAPTRELAQ
Sbjct: 114 TKNHYVLSARDVIAQAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQ 173
Query: 395 QIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVH 508
QIQKVV+ALGD+++ KCHACIGGTNVRED +LE GVH
Sbjct: 174 QIQKVVLALGDYMHVKCHACIGGTNVREDRMKLEEGVH 211
Score = 85.4 bits (202), Expect = 3e-17
Identities = 37/49 (75%), Positives = 43/49 (87%)
Frame = +3
Query: 114 GTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKD 260
G ++WD+VVE+FDDMNLKE LLRGIYAYGFEKPSAIQQRAI PC ++
Sbjct: 52 GKRQSNWDEVVESFDDMNLKEALLRGIYAYGFEKPSAIQQRAIRPCCQE 100
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +1
Query: 508 LVVGTPGRVYDMI 546
+VVGTPGRV+DMI
Sbjct: 212 VVVGTPGRVFDMI 224
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 89.0 bits (211), Expect = 2e-18
Identities = 38/55 (69%), Positives = 49/55 (89%)
Frame = +2
Query: 344 IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVH 508
+RE QAL+L+PTRELA QIQKVV+ALGD+++ +CHACIGGTN+ EDIR+L+ G H
Sbjct: 1 LREPQALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYGQH 55
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 78.6 bits (185), Expect = 3e-15
Identities = 35/79 (44%), Positives = 56/79 (70%)
Frame = +2
Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
GRD++A+A++GTG+TA + + +L+ DT+ QAL+L PTRELA Q ++ I LG H+
Sbjct: 84 GRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQALVLVPTRELALQTSQICIELGKHMG 143
Query: 437 AKCHACIGGTNVREDIRQL 493
A+ GGT++++DI +L
Sbjct: 144 AQVMVTTGGTSLKDDILRL 162
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
F+D LK ELL GI+ GF+KPS IQ+ +I
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESI 78
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 78.6 bits (185), Expect = 3e-15
Identities = 35/79 (44%), Positives = 56/79 (70%)
Frame = +2
Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
GRD++A+A++GTG+TA + + +L+ DT+ QAL+L PTRELA Q ++ I LG H+
Sbjct: 84 GRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQALVLVPTRELALQTSQICIELGKHMG 143
Query: 437 AKCHACIGGTNVREDIRQL 493
A+ GGT++++DI +L
Sbjct: 144 AQVMVTTGGTSLKDDILRL 162
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
F+D LK ELL GI+ GF+KPS IQ+ +I
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESI 78
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 69.7 bits (163), Expect = 1e-12
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
G D+IAQA+SGTG+T FS+ L+ + T Q +IL PTRE+A Q++ V+ A+G H +
Sbjct: 50 GLDLIAQAKSGTGKTCVFSVIALENVITESNCIQIIILTPTREIAVQVKDVICAIGCHYD 109
Query: 437 A-KCHACIGGTNVREDIRQLE 496
C IGG ++ ED + L+
Sbjct: 110 GLACKVFIGGISLEEDKKALK 130
Score = 32.7 bits (71), Expect = 0.20
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
F + L LLRG+ GFEKPS IQ +AI
Sbjct: 15 FHSLLLSPTLLRGLNEAGFEKPSPIQLKAI 44
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 61.7 bits (143), Expect = 4e-10
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Frame = +2
Query: 257 GRDVIAQAQSGTGQTATFSISIL-----QLIDTSIRECQALILAPTRELAQQIQKVVIAL 421
GRD++A AQ+G+G+TA + + +L Q ++ R AL +APTRELA+QI
Sbjct: 516 GRDLMACAQTGSGKTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRELAKQIYIEARKF 575
Query: 422 GDHLNAKCHACIGGTNVREDIRQLEXGVHW 511
DH K C GG +V QLE G H+
Sbjct: 576 SDHTPIKVCVCYGGVSVPYQASQLERGCHF 605
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 61.3 bits (142), Expect = 5e-10
Identities = 32/83 (38%), Positives = 47/83 (56%)
Frame = +2
Query: 260 RDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 439
+DVI A++G+G+T F++ ILQ + + + ALIL PTRELA QI + ALG +
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNPQRLFALILTPTRELAFQISEQCEALGSGIGV 61
Query: 440 KCHACIGGTNVREDIRQLEXGVH 508
KC +GG ++ L H
Sbjct: 62 KCAVIVGGIDMMSQALMLAKKPH 84
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 58.8 bits (136), Expect = 3e-09
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Frame = +2
Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIREC--QALILAPTRELAQQIQKVVIALGDH 430
G+DV+A A++G+G+TA F I + + + T + +ALIL+PTRELA Q QK + LG
Sbjct: 318 GKDVVAMARTGSGKTAAFLIPMFEKLQTHTAKVGIRALILSPTRELALQTQKFIKELGRF 377
Query: 431 LNAKCHACIGGTNV 472
K +GG +V
Sbjct: 378 TGLKSSVILGGDSV 391
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 54.0 bits (124), Expect = 8e-08
Identities = 26/56 (46%), Positives = 39/56 (69%)
Frame = +2
Query: 263 DVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDH 430
++IAQ+QSGTG+TA F +++L +D + Q + L+PT ELA+Q KV A+G H
Sbjct: 144 NMIAQSQSGTGKTAAFVLTMLSRVDATKPYPQVICLSPTYELARQTGKVAEAMGKH 199
Score = 36.7 bits (81), Expect = 0.012
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = +3
Query: 147 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKDAMLSL 275
++F+++ L L RG+Y GF KPS IQ+ A+ + D +++
Sbjct: 103 KSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPVNM 145
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 53.2 bits (122), Expect = 1e-07
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 9/81 (11%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGQTATFSISILQLI---------DTSIRECQALILAPTRELAQQIQK 406
Q RD+I A++G+G+TA F+I +L I + + + ALILAPTRELAQQI++
Sbjct: 137 QNRDIIGVAETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELAQQIEE 196
Query: 407 VVIALGDHLNAKCHACIGGTN 469
++ G L + + IGG +
Sbjct: 197 EILKFGRPLGIRTVSVIGGAD 217
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 53.2 bits (122), Expect = 1e-07
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 433
G D+I QA+SG G+TA F ++ LQ ++ + L++ TRELA QI K ++
Sbjct: 84 GMDIICQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMCHTRELAFQIHKEYERFCKYMS 143
Query: 434 NAKCHACIGGTNVREDIRQLE 496
N K GG N+++D + L+
Sbjct: 144 NIKIAVFFGGINIKKDQQTLK 164
Score = 33.1 bits (72), Expect = 0.15
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKDAMLSL 275
F D LK ELLR I GFE PS +Q CI A+L +
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHE----CIPQAILGM 85
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 53.2 bits (122), Expect = 1e-07
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 433
G D+I QA+SG G+TA F ++ LQ ++ + L++ TRELA QI K ++
Sbjct: 84 GMDIICQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMCHTRELAFQIHKEYERFCKYMS 143
Query: 434 NAKCHACIGGTNVREDIRQLE 496
N K GG N+++D + L+
Sbjct: 144 NIKIAVFFGGINIKKDQQTLK 164
Score = 33.1 bits (72), Expect = 0.15
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKDAMLSL 275
F D LK ELLR I GFE PS +Q CI A+L +
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHE----CIPQAILGM 85
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 53.2 bits (122), Expect = 1e-07
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Frame = +2
Query: 257 GRDVIAQAQSGTGQTATFSISILQ------LIDTSIREC---QALILAPTRELAQQIQKV 409
GRDV+A AQ+G+G+TA F + ++ L +S E QA+ +APTRELA QI
Sbjct: 748 GRDVMACAQTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIYLE 807
Query: 410 VIALGDHLNAKCHACIGGTNVREDIRQLEXG 502
+ C GG +V +RQL+ G
Sbjct: 808 ARKFAHGTMLRPVVCYGGVSVSHQLRQLQSG 838
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 52.8 bits (121), Expect = 2e-07
Identities = 31/85 (36%), Positives = 45/85 (52%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
QGRD I A++G+G+TA F++ ILQ + A++L PTRELA QI LG +
Sbjct: 43 QGRDCIGCAKTGSGKTAAFALPILQKLCDDPYGIFAVVLTPTRELAFQIADQFKVLGRPI 102
Query: 434 NAKCHACIGGTNVREDIRQLEXGVH 508
K +GG ++ + L H
Sbjct: 103 GLKEAVIVGGLDMMKQALSLANKPH 127
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 52.4 bits (120), Expect = 2e-07
Identities = 27/83 (32%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Frame = +2
Query: 257 GRDVIAQAQSGTGQTATFSISILQLID----TSIRECQALILAPTRELAQQIQKVVIALG 424
GRDV+ A++G+G+T F I I++ + TS+ AL+++PTRELA Q +V++ +G
Sbjct: 87 GRDVLGAAKTGSGKTLAFLIPIIETLWRQKWTSMDGLGALVISPTRELAYQTFEVLVKIG 146
Query: 425 DHLNAKCHACIGGTNVREDIRQL 493
+ + IGG +++ + +++
Sbjct: 147 NKHDLSAGLIIGGKDLKNEQKRI 169
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 48.8 bits (111), Expect = 3e-06
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Frame = +2
Query: 230 ATRNNALHQGRDVIAQAQSGTGQTATFSISILQ-LIDTSI-----RECQALILAPTRELA 391
A+ N ++ G DVI QA++GTG+T +F++ +++ L D + R + L++APTRELA
Sbjct: 101 ASTFNYIYDGEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAPKVLVMAPTRELA 160
Query: 392 QQIQKVVIALGDHLNAKC 445
+Q+ L +L C
Sbjct: 161 KQVGNEFENLKSNLEVYC 178
>SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 47.6 bits (108), Expect = 7e-06
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = +2
Query: 431 LNAKCHACIGGTNVREDIRQLEXGVH 508
++ KCHACIGGTNVRED +LE GVH
Sbjct: 1 MHVKCHACIGGTNVREDRMKLEEGVH 26
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +1
Query: 508 LVVGTPGRVYDMI 546
+VVGTPGRV+DMI
Sbjct: 27 VVVGTPGRVFDMI 39
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 47.2 bits (107), Expect = 9e-06
Identities = 22/48 (45%), Positives = 29/48 (60%)
Frame = +2
Query: 362 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGV 505
L+L PTRELAQQ+Q+V ++G H + GG IR+LE GV
Sbjct: 136 LVLCPTRELAQQVQEVAYSVGKHCKLRSTCIYGGAPKGPQIRELERGV 183
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 46.8 bits (106), Expect = 1e-05
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGQTATFSISILQLI---DTSIRE-CQALILAPTRELAQQIQKVVI 415
L +GRD++ A++G+G+T F + +++L+ R +I++PTREL+ Q V
Sbjct: 606 LLKGRDLLGAAKTGSGKTLAFLVPVVELLYKLQFKTRNGTGVIIISPTRELSLQTYGVAR 665
Query: 416 ALGDHLNAKCHACIGGTNVREDIRQLEXGVH 508
L H N +GG N + + +L+ GV+
Sbjct: 666 DLLKHHNFTYGIIMGGVNRKAEAERLQKGVN 696
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 46.0 bits (104), Expect = 2e-05
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Frame = +2
Query: 257 GRDVIAQAQSGTGQTATFS----ISILQLIDTSIRECQ-ALILAPTRELAQQIQKVVIAL 421
GRD+I A++G+G+TA F + I+ + + + LI APTREL QQI
Sbjct: 554 GRDIIGIAKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLICAPTRELCQQIYTEARRF 613
Query: 422 GDHLNAKCHACIGGTNVREDIRQLEXG 502
G N A GG N E + L+ G
Sbjct: 614 GKAYNIHVVAVFGGGNKYEQSKALQEG 640
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 41.9 bits (94), Expect = 3e-04
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 19/103 (18%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGQTATFSISILQLIDT--------------SIRECQ-----ALI 367
AL RD+I A++G+G+T F I I+Q I+ S E Q ALI
Sbjct: 164 ALLYHRDIIGAAETGSGKTLAFGIPIIQHIEAYKKRKAEQSPSDKESDLESQGYPLLALI 223
Query: 368 LAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 496
+APTRELA Q++ ++ + + K A +GG + R L+
Sbjct: 224 MAPTRELALQVKDHLVKAAKYTSVKVAAIVGGMAAPKQQRLLK 266
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Frame = +2
Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQ-----ALILAPTRELAQQI 400
GRD+I A++G+G+T +S+ + L+ T ALIL PTREL QQ+
Sbjct: 109 GRDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPTRELMQQV 161
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 129 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
D + +E+F D+NL EL + F+ P+ IQ +++
Sbjct: 66 DCPKPIESFHDLNLPPELSTYLAKKNFQVPTPIQMQSL 103
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Frame = +2
Query: 257 GRDVIAQAQSGTGQTATFSISILQLI---DTSIRECQALILAPTRELAQQ 397
G+DV A A +GTG+TA F + IL+ + T + L++ PTRELA Q
Sbjct: 47 GKDVCACAATGTGKTAAFMLPILERLLYRPTQSPAIRVLVITPTRELAIQ 96
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +2
Query: 347 RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXG 502
R+ A+++ PTRELA QI + N +C GGT + E I +L+ G
Sbjct: 143 RDMIAIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYGGTGISEQIAELKRG 194
>SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 32.7 bits (71), Expect = 0.20
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +3
Query: 24 ERRSEDWPEDSKNGPSKDQGSYD---GPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGI 194
E+ +E+ E +K + D+G GPPG GT D VVE DD K E G
Sbjct: 19 EKTAEEMRELAKKAEACDRGVRAILLGPPGSGKGTQLVSDDLVVELIDDNLTKPECQNGW 78
Query: 195 YAYGFEKPSA 224
GF + A
Sbjct: 79 LLDGFPRTVA 88
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 31.9 bits (69), Expect = 0.35
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Frame = +2
Query: 266 VIAQAQSGTGQTATFSISILQLIDTS---------IRECQALILAPTRELAQQIQKVVIA 418
VI AQ+G+G+T + ++ + ++ +A I+ P RELA QI K +
Sbjct: 418 VICAAQTGSGKTLAYLAPLVHRLREDEERHGILARLKRPRACIVVPARELATQILKTAKS 477
Query: 419 LGDHLNAKCHACIGG 463
L H + IGG
Sbjct: 478 LCHHARFRSVGLIGG 492
>SB_17830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 30.7 bits (66), Expect = 0.81
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -2
Query: 296 VQFLTGLER*HRVLDARHYCALLDCRRFFKTIGVYASQQFFFEVH 162
V FLT R +++ + RH C D F K Y +FFF+VH
Sbjct: 78 VVFLTFATRLYKLSEPRHIC--WDETHFGKHANFYIKGEFFFDVH 120
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 RDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELA-QQIQKVVIALGDHLN 436
+ ++ ++++GTG++ F +L + R +I+ PTRELA Q + +V LGD
Sbjct: 198 KSLLIKSETGTGKSLVF---LLPSVQDPGRGYGTIIVVPTRELASQMLYEVSRLLGD--K 252
Query: 437 AKCHACIGGTNVREDIRQLEXGVH 508
+ + + G ++ + L+ +H
Sbjct: 253 SIVASFVSGVDLSRQEKLLKDSLH 276
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 257
F+D++L E LL + G++KP+ +Q+ AI P +K
Sbjct: 877 FEDVDLGEILLHNVGLAGYKKPTPVQKYAI-PIVK 910
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 260 RDVIAQAQSGTGQTATFSISILQLI 334
RD++A AQ+G+G+TA F I IL I
Sbjct: 913 RDLMACAQTGSGKTAAFLIPILSRI 937
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 63 GPSKDQG-SYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRG 191
GP +QG S GPPG PG T W+ + N E LRG
Sbjct: 3363 GPKGEQGRSISGPPG-PPGAPGTSWNDSIVNGGLSNSLLESLRG 3405
>SB_31593| Best HMM Match : Ribonuclease_3 (HMM E-Value=6.30024e-42)
Length = 618
Score = 28.7 bits (61), Expect = 3.3
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Frame = +3
Query: 6 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELL 185
N SYSS + EDW + ++ P +G P P +L T +++E N+ E L
Sbjct: 265 NQSYSSGQLPEDWTK-AQVVPIFKKGVKHDPCNYRPVSLTTVLCKLMEHVIYKNIMEHLE 323
Query: 186 RG--IYA--YGFEKPSAIQQRAIMPCIKDAMLSLKPSQELDKLLLSLYRFYN 329
++A +GF K + + + ++ ++D + ++D L+L + ++
Sbjct: 324 NNNILFANQHGFRKNHSCETQLLL-TVEDLARNTDNGGQIDMLILDFSKAFD 374
>SB_30812| Best HMM Match : RVT_1 (HMM E-Value=1.2e-40)
Length = 325
Score = 28.7 bits (61), Expect = 3.3
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Frame = +3
Query: 6 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELL 185
N SYSS + EDW + ++ P +G P P +L T +++E N+ E L
Sbjct: 83 NQSYSSGQLPEDWTK-AQVVPIFKKGVKHDPCNYRPVSLTTVLCKLMEHVIYKNIMEHLE 141
Query: 186 RG--IYA--YGFEKPSAIQQRAIMPCIKDAMLSLKPSQELDKLLLSLYRFYN 329
++A +GF K + + + ++ ++D + ++D L+L + ++
Sbjct: 142 NNNILFANQHGFRKNHSCETQLLL-TVEDLARNTDNGGQIDMLILDFSKAFD 192
>SB_11753| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 393
Score = 28.7 bits (61), Expect = 3.3
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Frame = +3
Query: 6 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELL 185
N SYSS + EDW + ++ P +G P P +L T +++E N+ E L
Sbjct: 83 NQSYSSGQLPEDWTK-AQVVPIFKKGVKHDPCNYRPVSLTTVLCKLMEHVIYKNIMEHLE 141
Query: 186 RG--IYA--YGFEKPSAIQQRAIMPCIKDAMLSLKPSQELDKLLLSLYRFYN 329
++A +GF K + + + ++ ++D + ++D L+L + ++
Sbjct: 142 NNNILFANQHGFRKNHSCETQLLL-TVEDLARNTDNGGQIDMLILDFSKAFD 192
>SB_24534| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 423
Score = 28.7 bits (61), Expect = 3.3
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Frame = +3
Query: 6 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELL 185
N SYSS + EDW + ++ P +G P P +L T +++E N+ E L
Sbjct: 83 NQSYSSGQLPEDWTK-AQVVPIFKKGVKHDPCNYRPVSLTTVLCKLMEHVIYKNIMEHLE 141
Query: 186 RG--IYA--YGFEKPSAIQQRAIMPCIKDAMLSLKPSQELDKLLLSLYRFYN 329
++A +GF K + + + ++ ++D + ++D L+L + ++
Sbjct: 142 NNNILFANQHGFRKNHSCETQLLL-TVEDLARNTDNGGQIDMLILDFSKAFD 192
>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
Length = 2059
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +3
Query: 6 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGP 98
+M Y SER P D P+ D GS D P
Sbjct: 1171 SMEYDSERHPYQAPADEMVNPNTDGGSRDNP 1201
>SB_34297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 512
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 335 DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 457
D++++E IL ELA++IQK++ LN K AC+
Sbjct: 60 DSTLKEPVQKILIIGLELAKEIQKLIDEASSGLNIKHAACL 100
>SB_15811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 445 AFSIQVITKSYHHLLNLLGQLSCGSQDQSLTFTNACID 332
A ++Q +TK+Y HL+N+ G +++ T C D
Sbjct: 201 AHALQTLTKAYRHLMNVTGN---RDKEEKANATEQCAD 235
>SB_48723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 253 SRTRCYRSSPVRNWTNCYFLYIDSTTNRYKH 345
S+T+ Y S + NW +C+ +++ T +Y H
Sbjct: 155 SKTKKYLS--IENWISCFHIFVGVYTQKYCH 183
>SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09)
Length = 969
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 253 SRTRCYRSSPVRNWTNCYFLYIDSTTNRYKH 345
S+T+ Y S + NW +C+ +++ T +Y H
Sbjct: 233 SKTKKYLS--IENWISCFHIFVGVYTQKYCH 261
>SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2)
Length = 671
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 253 SRTRCYRSSPVRNWTNCYFLYIDSTTNRYKH 345
S+T+ Y S + NW +C+ +++ T +Y H
Sbjct: 124 SKTKKYLS--IENWISCFHIFVGVYTQKYCH 152
>SB_23509| Best HMM Match : XET_C (HMM E-Value=3.6)
Length = 362
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 253 SRTRCYRSSPVRNWTNCYFLYIDSTTNRYKH 345
S+T+ Y S + NW +C+ +++ T +Y H
Sbjct: 196 SKTKKYLS--IENWISCFHIFVGVYTQKYCH 224
>SB_57858| Best HMM Match : RNA_pol_A_CTD (HMM E-Value=5.7)
Length = 280
Score = 27.9 bits (59), Expect = 5.7
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Frame = +3
Query: 6 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELL 185
N SYSS + EDW + ++ P +G P P +L T +++E N+ E L
Sbjct: 175 NQSYSSGQLPEDWTK-AQVVPIFKKGVKHDPCNYRPVSLTTVLCKLMEHVIYKNIMEHLE 233
Query: 186 RG--IYA--YGFEKPSAIQQRAIMPCIKDAMLSLKPSQELDKLLL 308
++A +GF K + + + ++ ++D + ++D L+L
Sbjct: 234 NNNILFANQHGFRKNHSCETQLLL-TVEDLARNTDNGGQIDMLIL 277
>SB_44173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 48 EDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEE 179
+D N + D G+ D D GT+D D D V+ DD N +
Sbjct: 71 DDDGNIDNDDDGNIDND---DDGTIDNDDDGYVDNVDDDNFDND 111
>SB_43286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 253 SRTRCYRSSPVRNWTNCYFLYIDSTTNRYKH 345
S+T+ Y S + NW +C+ +++ T +Y H
Sbjct: 233 SKTKKYLS--IENWISCFHIFVGVYTQKYCH 261
>SB_30467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 48 EDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEE 179
+D N + D G+ D D GT+D D D V+ DD N +
Sbjct: 54 DDDGNIDNDDDGNIDND---DDGTIDNDDDGYVDNVDDDNFDND 94
>SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)
Length = 829
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 200 GVYASQQFFFEVHVIEGFDNLIPVGVKC 117
GVY F H + GF N IP +C
Sbjct: 742 GVYLESNVFQNGHALVGFQNTIPASQEC 769
>SB_2750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 253 SRTRCYRSSPVRNWTNCYFLYIDSTTNRYKH 345
S+T+ Y S + NW +C+ +++ T +Y H
Sbjct: 233 SKTKKYLS--IENWISCFHIFVGVYTQKYCH 261
>SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09)
Length = 944
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 253 SRTRCYRSSPVRNWTNCYFLYIDSTTNRYKH 345
S+T+ Y S + NW +C+ +++ T +Y H
Sbjct: 233 SKTKKYLS--IENWISCFHIFVGVYTQKYCH 261
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,779,813
Number of Sequences: 59808
Number of extensions: 406884
Number of successful extensions: 1884
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 1752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1872
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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