Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0254
         (546 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       51   9e-09
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.5  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   1.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   3.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 50.8 bits (116), Expect = 9e-09
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 9/93 (9%)
 Frame = +2

Query: 257 GRDVIAQAQSGTGQTATFSISILQ-LIDTSIR--------ECQALILAPTRELAQQIQKV 409
           GRD++A AQ+G+G+TA F++ I+  L++ S+         E Q +I++PTREL  QI + 
Sbjct: 233 GRDLMACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQ 292

Query: 410 VIALGDHLNAKCHACIGGTNVREDIRQLEXGVH 508
           ++    +   K     GGT+V     +L  G H
Sbjct: 293 IVKFSLNSILKTVVAYGGTSVMHQRGKLSAGCH 325



 Score = 27.9 bits (59), Expect = 0.071
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +3

Query: 138 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
           Q +E+F+   L+  +L  I   G++KP+ +Q+ A+
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHAL 227



 Score = 23.0 bits (47), Expect = 2.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 502 CSLVVGTPGRVYDMI 546
           C ++V TPGR+ D +
Sbjct: 324 CHILVATPGRLLDFV 338


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 8/110 (7%)
 Frame = +2

Query: 167 PQRRIVERHIRLWF*KTFC----NPATRNNALHQGRDV---IAQAQSGTGQTATFSISIL 325
           P +++    I  WF  TFC    N AT  NA+     +     + ++  G  A +++  +
Sbjct: 521 PDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKG--AVWTVDEV 578

Query: 326 QLID-TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 472
           +       R C      P++  +  +       GD LNA   A +G +N+
Sbjct: 579 EFYKRRPQRACSTTGGVPSK--SPTLTHSPTMYGDALNANLQAALGDSNM 626


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 473 GHWCHQCKHGI*HSS 429
           G  CH+CK+GI  SS
Sbjct: 40  GDSCHKCKYGIAMSS 54


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +1

Query: 451 LHWWHQCP 474
           LH WH CP
Sbjct: 470 LHHWHHCP 477


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,963
Number of Sequences: 438
Number of extensions: 3918
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)