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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0254
         (546 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13920.1 68416.m01758 eukaryotic translation initiation facto...   121   3e-28
At1g72730.1 68414.m08410 eukaryotic translation initiation facto...   119   1e-27
At3g19760.1 68416.m02501 eukaryotic translation initiation facto...   118   2e-27
At1g54270.1 68414.m06187 eukaryotic translation initiation facto...   118   3e-27
At1g51380.1 68414.m05780 eukaryotic translation initiation facto...   107   4e-24
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila...    79   2e-15
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila...    79   2e-15
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)...    76   1e-14
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)...    76   1e-14
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative              71   7e-13
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila...    61   5e-10
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative              58   5e-09
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)...    58   5e-09
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar...    57   7e-09
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila...    57   9e-09
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s...    56   1e-08
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)...    56   2e-08
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)...    56   2e-08
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar...    54   8e-08
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar...    53   1e-07
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he...    53   1e-07
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY...    52   3e-07
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ...    52   3e-07
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ...    52   3e-07
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ...    52   3e-07
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar...    52   3e-07
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden...    51   4e-07
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)...    51   6e-07
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar...    51   6e-07
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila...    50   1e-06
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar...    49   2e-06
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar...    49   2e-06
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ...    47   9e-06
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ...    47   9e-06
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila...    47   9e-06
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica...    46   1e-05
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica...    46   1e-05
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co...    46   1e-05
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ...    46   1e-05
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c...    46   2e-05
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c...    46   2e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila...    44   9e-05
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ...    43   1e-04
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila...    43   2e-04
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)...    42   2e-04
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila...    42   2e-04
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim...    42   3e-04
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)       42   3e-04
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ...    41   5e-04
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he...    41   5e-04
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar...    41   5e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar...    40   8e-04
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)...    40   0.001
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai...    40   0.001
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai...    39   0.003
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative              39   0.003
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA...    38   0.003
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative           38   0.006
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id...    37   0.008
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /...    35   0.031
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila...    33   0.12 
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)...    32   0.29 
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai...    30   0.88 
At3g10020.1 68416.m01202 expressed protein                             29   1.5  
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa...    29   2.0  
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi...    29   2.0  
At1g76010.1 68414.m08825 expressed protein                             28   4.7  
At5g53760.1 68418.m06680 seven transmembrane MLO family protein ...    27   6.2  
At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi...    27   6.2  
At5g03500.1 68418.m00306 transcriptional co-activator-related lo...    27   8.2  
At5g03220.1 68418.m00270 transcriptional co-activator-related co...    27   8.2  

>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
           4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
           contains Pfam profile PF00270: DEAD/DEAH box helicase;
           contains Pfam profile PF00271: Helicase conserved
           C-terminal domain
          Length = 412

 Score =  121 bits (292), Expect = 3e-28
 Identities = 57/85 (67%), Positives = 70/85 (82%)
 Frame = +2

Query: 254 QGRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
           +G DVI QAQSGTG+TATF   +LQ +D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L
Sbjct: 75  KGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYL 134

Query: 434 NAKCHACIGGTNVREDIRQLEXGVH 508
             K HAC+GGT+VRED R L+ GVH
Sbjct: 135 GVKVHACVGGTSVREDQRILQAGVH 159



 Score = 66.9 bits (156), Expect = 8e-12
 Identities = 31/44 (70%), Positives = 35/44 (79%)
 Frame = +3

Query: 126 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 257
           T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P  K
Sbjct: 32  TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK 75



 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/13 (76%), Positives = 13/13 (100%)
 Frame = +1

Query: 508 LVVGTPGRVYDMI 546
           +VVGTPGRV+DM+
Sbjct: 160 VVVGTPGRVFDML 172


>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
           4A, putative / eIF-4A, putative similar to Eukaryotic
           initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
           identical to (putative) RNA helicase GB:CAA09211
           [Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
           628-636 (1999))
          Length = 414

 Score =  119 bits (287), Expect = 1e-27
 Identities = 56/85 (65%), Positives = 69/85 (81%)
 Frame = +2

Query: 254 QGRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
           +G DVI QAQSGTG+TATF   +LQ +D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L
Sbjct: 77  KGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYL 136

Query: 434 NAKCHACIGGTNVREDIRQLEXGVH 508
             K  AC+GGT+VRED R L+ GVH
Sbjct: 137 GVKAQACVGGTSVREDQRVLQSGVH 161



 Score = 66.9 bits (156), Expect = 8e-12
 Identities = 30/47 (63%), Positives = 38/47 (80%)
 Frame = +3

Query: 117 TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 257
           T  T++D+V ++FD M L+ +LLRGIYAYGFEKPSAIQQR I+P  K
Sbjct: 31  TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCK 77


>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
           4A, putative / eIF-4A, putative / DEAD box RNA helicase,
           putative contains DEAD/DEAH helicase domain; similar to
           RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
           identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
          Length = 408

 Score =  118 bits (285), Expect = 2e-27
 Identities = 55/85 (64%), Positives = 69/85 (81%)
 Frame = +2

Query: 254 QGRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
           QGRDVIAQAQSGTG+T+  ++S+ Q++DTS RE QALIL+PTRELA Q +K + A+G H 
Sbjct: 71  QGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHA 130

Query: 434 NAKCHACIGGTNVREDIRQLEXGVH 508
           N + HACIGG +V EDIR+LE GVH
Sbjct: 131 NIQAHACIGGNSVGEDIRKLEHGVH 155



 Score = 64.5 bits (150), Expect = 4e-11
 Identities = 26/44 (59%), Positives = 37/44 (84%)
 Frame = +3

Query: 126 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 257
           TD  + + +F+DM +KE++LRG+Y YGFEKPSAIQQRA+MP ++
Sbjct: 28  TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQ 71


>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
           4A-2 / eIF-4A-2 similar to eukaryotic translation
           initiation factor 4A GI:19696 from [Nicotiana
           plumbaginifolia]
          Length = 412

 Score =  118 bits (284), Expect = 3e-27
 Identities = 55/85 (64%), Positives = 69/85 (81%)
 Frame = +2

Query: 254 QGRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
           +G DVI QAQSGTG+TATF   +LQ +D ++ +CQAL+LAPTRELAQQI+KV+ ALGD+ 
Sbjct: 75  KGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQ 134

Query: 434 NAKCHACIGGTNVREDIRQLEXGVH 508
             K HAC+GGT+VRED R L+ GVH
Sbjct: 135 GVKVHACVGGTSVREDQRILQAGVH 159



 Score = 67.7 bits (158), Expect = 5e-12
 Identities = 31/44 (70%), Positives = 36/44 (81%)
 Frame = +3

Query: 126 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 257
           T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P  K
Sbjct: 32  TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK 75



 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/13 (76%), Positives = 13/13 (100%)
 Frame = +1

Query: 508 LVVGTPGRVYDMI 546
           +VVGTPGRV+DM+
Sbjct: 160 VVVGTPGRVFDML 172


>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
           4A, putative / eIF-4A, putative
          Length = 392

 Score =  107 bits (258), Expect = 4e-24
 Identities = 47/85 (55%), Positives = 67/85 (78%)
 Frame = +2

Query: 254 QGRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
           +GRDVIAQAQSGTG+T+  +IS+ Q+++ S R+ Q L+L+P+RELA Q +K + A+G H 
Sbjct: 58  KGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHT 117

Query: 434 NAKCHACIGGTNVREDIRQLEXGVH 508
           N + HACIGG ++ EDI++LE GVH
Sbjct: 118 NIQAHACIGGKSIGEDIKKLERGVH 142



 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 20/38 (52%), Positives = 33/38 (86%)
 Frame = +3

Query: 144 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 257
           +++FDDM + +++LRG+Y YG++KPS IQQRA++P +K
Sbjct: 21  IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILK 58



 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = +1

Query: 511 VVGTPGRVYDMI 546
           V GTPGRVYDMI
Sbjct: 144 VSGTPGRVYDMI 155


>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 38/84 (45%), Positives = 55/84 (65%)
 Frame = +2

Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
           GRD++A+A++GTG+TA F I +L+ ID      QA+I+ PTRELA Q  +V   LG HL 
Sbjct: 168 GRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLK 227

Query: 437 AKCHACIGGTNVREDIRQLEXGVH 508
            +     GGT++++DI +L   VH
Sbjct: 228 IQVMVTTGGTSLKDDIMRLYQPVH 251



 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +3

Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
           F+D  LK ELL GIY  GFE+PS IQ+ +I
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESI 162


>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 38/84 (45%), Positives = 55/84 (65%)
 Frame = +2

Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
           GRD++A+A++GTG+TA F I +L+ ID      QA+I+ PTRELA Q  +V   LG HL 
Sbjct: 168 GRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLK 227

Query: 437 AKCHACIGGTNVREDIRQLEXGVH 508
            +     GGT++++DI +L   VH
Sbjct: 228 IQVMVTTGGTSLKDDIMRLYQPVH 251



 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +3

Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
           F+D  LK ELL GIY  GFE+PS IQ+ +I
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESI 162


>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
           identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
          Length = 498

 Score = 76.2 bits (179), Expect = 1e-14
 Identities = 37/84 (44%), Positives = 54/84 (64%)
 Frame = +2

Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
           G D++A+A++GTG+T  F I +L+ ID +    QA+IL PTRELA Q  +V   L  +LN
Sbjct: 161 GSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLN 220

Query: 437 AKCHACIGGTNVREDIRQLEXGVH 508
            +     GGT++R+DI +L   VH
Sbjct: 221 IQVMVTTGGTSLRDDIMRLHQPVH 244



 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +3

Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
           F+D  LK +LL+GIY  GFEKPS IQ+ +I
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESI 155


>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
           identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
          Length = 498

 Score = 76.2 bits (179), Expect = 1e-14
 Identities = 37/84 (44%), Positives = 54/84 (64%)
 Frame = +2

Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
           G D++A+A++GTG+T  F I +L+ ID +    QA+IL PTRELA Q  +V   L  +LN
Sbjct: 161 GSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLN 220

Query: 437 AKCHACIGGTNVREDIRQLEXGVH 508
            +     GGT++R+DI +L   VH
Sbjct: 221 IQVMVTTGGTSLRDDIMRLHQPVH 244



 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +3

Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
           F+D  LK +LL+GIY  GFEKPS IQ+ +I
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESI 155


>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
          Length = 528

 Score = 70.5 bits (165), Expect = 7e-13
 Identities = 36/84 (42%), Positives = 51/84 (60%)
 Frame = +2

Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
           G D++A+A++GTG+T  F I  L+ ID      QA+IL PTRELA Q  +V   L  +L 
Sbjct: 191 GSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLK 250

Query: 437 AKCHACIGGTNVREDIRQLEXGVH 508
            +     GGT++R+DI +L   VH
Sbjct: 251 IEVMVTTGGTSLRDDIMRLYQPVH 274



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 19/30 (63%), Positives = 23/30 (76%)
 Frame = +3

Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
           F+D  LK +LLRGIY  GFEKPS IQ+ +I
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESI 185


>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
           to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
           melanogaster and is a member of PF|00270 DEAD/DEAH box
           helicase family
          Length = 491

 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 30/72 (41%), Positives = 45/72 (62%)
 Frame = +2

Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
           GRDV+  AQ+G+G+TA F++ IL  +        AL++ PTRELA Q+ +   ALG  LN
Sbjct: 95  GRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLN 154

Query: 437 AKCHACIGGTNV 472
            +C   +GG ++
Sbjct: 155 LRCSVIVGGMDM 166


>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
          Length = 427

 Score = 57.6 bits (133), Expect = 5e-09
 Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
 Frame = +2

Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 433
           G DVI QA+SG G+TA F +S LQ I+ S  +  AL+L  TRELA QI    +    +L 
Sbjct: 83  GMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLP 142

Query: 434 NAKCHACIGGTNVR 475
           + K     GG N++
Sbjct: 143 DTKVSVFYGGVNIK 156



 Score = 33.1 bits (72), Expect = 0.12
 Identities = 19/41 (46%), Positives = 22/41 (53%)
 Frame = +3

Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKDAMLSL 275
           F D  LK ELLR I   GFE PS +Q      CI  A+L +
Sbjct: 48  FRDFLLKPELLRAIVDSGFEHPSEVQHE----CIPQAILGM 84


>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
           DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
           EMBL:ATH010466
          Length = 427

 Score = 57.6 bits (133), Expect = 5e-09
 Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
 Frame = +2

Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 433
           G DVI QA+SG G+TA F +S LQ I+ S  +  AL+L  TRELA QI    +    +L 
Sbjct: 83  GMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLP 142

Query: 434 NAKCHACIGGTNVR 475
           + K     GG N++
Sbjct: 143 DTKVSVFYGGVNIK 156



 Score = 33.1 bits (72), Expect = 0.12
 Identities = 19/41 (46%), Positives = 22/41 (53%)
 Frame = +3

Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKDAMLSL 275
           F D  LK ELLR I   GFE PS +Q      CI  A+L +
Sbjct: 48  FRDFLLKPELLRAIVDSGFEHPSEVQHE----CIPQAILGM 84


>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
           RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 616

 Score = 57.2 bits (132), Expect = 7e-09
 Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 6/90 (6%)
 Frame = +2

Query: 254 QGRDVIAQAQSGTGQTATFSISIL-QLIDTSI-----RECQALILAPTRELAQQIQKVVI 415
           +GRD+I +A++GTG+T  F I I+ ++I  +      R    L+LAPTRELA+Q++K   
Sbjct: 140 EGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFR 199

Query: 416 ALGDHLNAKCHACIGGTNVREDIRQLEXGV 505
                L+  C    GGT + + +RQL+ GV
Sbjct: 200 ESAPSLDTIC--LYGGTPIGQQMRQLDYGV 227


>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
           to RNA helicase GI:3776027 from [Arabidopsis thaliana]
          Length = 513

 Score = 56.8 bits (131), Expect = 9e-09
 Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
 Frame = +2

Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRE--CQALILAPTRELAQQIQKVVIALGDH 430
           G DV+A A++G+G+TA F I +L+ +   + +   +ALIL+PTR+LA+Q  K    LG  
Sbjct: 65  GVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKF 124

Query: 431 LNAKCHACIGGTNVREDIRQLEXG 502
            + +    +GG ++ +   +L  G
Sbjct: 125 TDLRVSLLVGGDSMEDQFEELTKG 148


>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
           similar to RNA helicases GI:3775995, GI:3775987
           [Arabidopsis thaliana]; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 610

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 6/90 (6%)
 Frame = +2

Query: 254 QGRDVIAQAQSGTGQTATFSISIL-QLIDTSI-----RECQALILAPTRELAQQIQKVVI 415
           +GRD+I +A++GTG+T  F I I+ ++I  +      +  Q L+LAPTRELA+Q++K   
Sbjct: 152 EGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFR 211

Query: 416 ALGDHLNAKCHACIGGTNVREDIRQLEXGV 505
                L+  C    GGT + + +R+L  G+
Sbjct: 212 ESAPSLDTIC--LYGGTPIGQQMRELNYGI 239


>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
           identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
          Length = 789

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
 Frame = +2

Query: 257 GRDVIAQAQSGTGQTATFSISILQLI---DTSIRECQALILAPTRELAQQIQKVVIALGD 427
           GRD+ A A +G+G+TA F++  L+ +      +   + LIL PTRELA QI  ++  L  
Sbjct: 204 GRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQ 263

Query: 428 HLNAKCHACIGGTNVRE 478
             + KC   +GG +VRE
Sbjct: 264 FTDIKCGLIVGGLSVRE 280



 Score = 30.3 bits (65), Expect = 0.88
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 147 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
           +TF ++NL   LLR     G++KP+ IQ   I
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACI 198


>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
           DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
           EMBL:ATH010466
          Length = 344

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
 Frame = +2

Query: 263 DVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 439
           DVI QA+SG G+TA F +S LQ I+ S  +  AL+L  TRELA QI    +    +L + 
Sbjct: 2   DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 61

Query: 440 KCHACIGGTNVR 475
           K     GG N++
Sbjct: 62  KVSVFYGGVNIK 73


>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 633

 Score = 53.6 bits (123), Expect = 8e-08
 Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 10/96 (10%)
 Frame = +2

Query: 248 LHQGRDVIAQAQSGTGQTATFSISILQLI--DTSIRECQ--------ALILAPTRELAQQ 397
           L +GRD++A AQ+G+G+TA F   I+  I  D  ++  +        A+IL+PTRELA Q
Sbjct: 193 LLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQ 252

Query: 398 IQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGV 505
           I             K     GGT + + +R+LE GV
Sbjct: 253 IHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGV 288


>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 646

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 41/105 (39%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
 Frame = +2

Query: 227 PATRNNA--LHQGRDVIAQAQSGTGQTATFSISILQLI--DTSIRECQ--------ALIL 370
           P  RN    L  GRD++A AQ+G+G+TA F   I+  I  D  I   +        A+IL
Sbjct: 171 PVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVIL 230

Query: 371 APTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGV 505
           +PTRELA QI             K     GGT V + IR+LE GV
Sbjct: 231 SPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGV 275


>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
           helicase, Mus musculus, PIR:I49731
          Length = 496

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 24/55 (43%), Positives = 38/55 (69%)
 Frame = +2

Query: 260 RDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALG 424
           + +IAQA +G+G+T  F + +L  +D ++RE QAL + PTRELA Q  +V+  +G
Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMG 186



 Score = 33.9 bits (74), Expect = 0.071
 Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +3

Query: 153 FDDMNLKEELLRGIYA-YGFEKPSAIQ 230
           F+D+NL  EL++G+Y    FEKPS IQ
Sbjct: 93  FEDLNLSPELMKGLYVEMKFEKPSKIQ 119


>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
           EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
           sapiens, SWISSPROT:IF42_HUMAN
          Length = 472

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 25/54 (46%), Positives = 34/54 (62%)
 Frame = +2

Query: 248 LHQGRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKV 409
           L  GRD I  AQ+G+G+T T+ + I  LI+      QA+I+ PTREL  Q+ KV
Sbjct: 110 LFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKV 163


>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
           RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 619

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
 Frame = +2

Query: 254 QGRDVIAQAQSGTGQTATFSIS---ILQLIDTSIRECQA-LILAPTRELAQQIQKVVIAL 421
           QGRD++A A++G+G+T  + I     LQ I    R     L+L+PTRELA QIQ+  +  
Sbjct: 194 QGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKF 253

Query: 422 GDHLNAKCHACIGGTNVREDIRQLEXG 502
           G      C    GG      +R LE G
Sbjct: 254 GRSSRISCTCLYGGAPKGPQLRDLERG 280


>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
           RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 619

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
 Frame = +2

Query: 254 QGRDVIAQAQSGTGQTATFSIS---ILQLIDTSIRECQA-LILAPTRELAQQIQKVVIAL 421
           QGRD++A A++G+G+T  + I     LQ I    R     L+L+PTRELA QIQ+  +  
Sbjct: 194 QGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKF 253

Query: 422 GDHLNAKCHACIGGTNVREDIRQLEXG 502
           G      C    GG      +R LE G
Sbjct: 254 GRSSRISCTCLYGGAPKGPQLRDLERG 280


>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
           RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 618

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
 Frame = +2

Query: 254 QGRDVIAQAQSGTGQTATFSIS---ILQLIDTSIRECQA-LILAPTRELAQQIQKVVIAL 421
           QGRD++A A++G+G+T  + I     LQ I    R     L+L+PTRELA QIQ+  +  
Sbjct: 194 QGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKF 253

Query: 422 GDHLNAKCHACIGGTNVREDIRQLEXG 502
           G      C    GG      +R LE G
Sbjct: 254 GRSSRISCTCLYGGAPKGPQLRDLERG 280


>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
           SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain
          Length = 733

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 8/91 (8%)
 Frame = +2

Query: 254 QGRDVIAQAQSGTGQTATFSISILQLID-----TSIRECQ---ALILAPTRELAQQIQKV 409
           Q RDVI  A++G+G+TA F + +L  I      +   E +   A+++APTRELAQQI++ 
Sbjct: 349 QQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEE 408

Query: 410 VIALGDHLNAKCHACIGGTNVREDIRQLEXG 502
            +    +L  +  + +GG ++ E   ++  G
Sbjct: 409 TVKFAHYLGFRVTSIVGGQSIEEQGLKITQG 439



 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 144 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
           + ++++  L  ELL+ +   G++KPS IQ  AI
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAI 344


>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
           identical to RNA helicase [Arabidopsis thaliana]
           GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain, PF00098: Zinc knuckle
          Length = 747

 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 10/74 (13%)
 Frame = +2

Query: 254 QGRDVIAQAQSGTGQTATFSISILQLID------TSIREC----QALILAPTRELAQQIQ 403
           QGRD+IA+A++GTG+T  F I I++ +       T+ R      + L+LAPTRELA+Q++
Sbjct: 138 QGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVE 197

Query: 404 KVVIALGDHLNAKC 445
           K +     +L+  C
Sbjct: 198 KEIKESAPYLSTVC 211


>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
           probable replication protein A1, Oryza sativa,
           EMBL:AF009179
          Length = 456

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 12/82 (14%)
 Frame = +2

Query: 254 QGRDVIAQAQSGTGQTATFSISILQLIDTSIRECQ------------ALILAPTRELAQQ 397
           +G+DVI  AQ+G+G+T  F+I ILQ +   + + +            A +L+PTRELA Q
Sbjct: 45  EGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQ 104

Query: 398 IQKVVIALGDHLNAKCHACIGG 463
           I +   ALG  ++ +C   +GG
Sbjct: 105 IAEQFEALGADISLRCAVLVGG 126



 Score = 33.1 bits (72), Expect = 0.12
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = +3

Query: 135 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
           ++VV+TF ++ ++EEL++     G++ PS IQ  A+
Sbjct: 5   NEVVKTFAELGVREELVKACERLGWKNPSKIQAEAL 40


>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
           RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF00397:
           WW domain
          Length = 1088

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
 Frame = +2

Query: 254 QGRDVIAQAQSGTGQTATFSISILQLI----DTSIRECQALILAPTRELAQQIQKVVIAL 421
           Q RD++A A++G+G+T  + I    L+    + S      LILAPTRELA QIQ   +  
Sbjct: 471 QSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALRF 530

Query: 422 GDHLNAKCHACIGGTNVREDIRQLEXG 502
           G      C    GG      +++LE G
Sbjct: 531 GRSSRISCTCLYGGAPKGPQLKELERG 557


>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
           to D-E-A-D box protein [Drosophila melanogaster]
           GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 512

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 23/79 (29%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
 Frame = +2

Query: 260 RDVIAQAQSGTGQTATFSISILQLI-DTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
           RD+   + +G+G+T ++++ I+QL+    +R  +AL++ PTR+LA Q++ V  A+   + 
Sbjct: 63  RDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVG 122

Query: 437 AKCHACIGGTNVREDIRQL 493
               + +G +++  +I QL
Sbjct: 123 LSVGSAVGQSSIAGEISQL 141


>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
           RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF00397:
           WW domain
          Length = 713

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
 Frame = +2

Query: 254 QGRDVIAQAQSGTGQTATFSIS---ILQLIDTSIRECQA-LILAPTRELAQQIQKVVIAL 421
           Q RD++A A++G+G+T  + I     LQ I    R     L+L+PTRELA QIQ   +  
Sbjct: 265 QNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKF 324

Query: 422 GDHLNAKCHACIGGTNVREDIRQLEXGV 505
           G      C    GG      ++++E GV
Sbjct: 325 GKSSKISCACLYGGAPKGPQLKEIERGV 352


>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
           RNA helicase [Rattus norvegicus] GI:897915; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 1166

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
 Frame = +2

Query: 257 GRDVIAQAQSGTGQTATFSISILQLI-DTSIRECQ----ALILAPTRELAQQIQKVVIAL 421
           GRD I  A++G+G+T  F + +L+ I D    E       L++APTREL QQI   +   
Sbjct: 566 GRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKF 625

Query: 422 GDHLNAKCHACIGGTNVREDIRQLEXG 502
              L  +C    GG+ V + I +L+ G
Sbjct: 626 SKPLGIRCVPVYGGSGVAQQISELKRG 652


>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
           similar to RNA helicase DBY protein [Mus musculus]
           GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
           protein 2) {Homo sapiens}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain; identical to cDNA DEAD box
           RNA helicase, RH11 GI:3775998
          Length = 612

 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
 Frame = +2

Query: 260 RDVIAQAQSGTGQTATFSISILQLI--DTSIRECQ--------ALILAPTRELAQQIQKV 409
           RD++A AQ+G+G+TA F   I+  I  D  +   +        A+IL+PTRELA QI   
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248

Query: 410 VIALGDHLNAKCHACIGGTNVREDIRQLEXG 502
                     K     GGT + + +R+LE G
Sbjct: 249 AKKFSYQTGVKVVVAYGGTPIHQQLRELERG 279


>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
           similar to RNA helicase DBY protein [Mus musculus]
           GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
           protein 2) {Homo sapiens}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain; identical to cDNA DEAD box
           RNA helicase, RH11 GI:3775998
          Length = 612

 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
 Frame = +2

Query: 260 RDVIAQAQSGTGQTATFSISILQLI--DTSIRECQ--------ALILAPTRELAQQIQKV 409
           RD++A AQ+G+G+TA F   I+  I  D  +   +        A+IL+PTRELA QI   
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248

Query: 410 VIALGDHLNAKCHACIGGTNVREDIRQLEXG 502
                     K     GGT + + +R+LE G
Sbjct: 249 AKKFSYQTGVKVVVAYGGTPIHQQLRELERG 279


>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
           to RNA helicase GB:A57514 GI:897915 from [Rattus
           norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 989

 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
 Frame = +2

Query: 257 GRDVIAQAQSGTGQTATFSISILQLI-DTSIRECQ----ALILAPTRELAQQIQKVVIAL 421
           GRD I  A++G+G+T  F + +L+ I D    E       L++APTREL QQI   +   
Sbjct: 433 GRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKF 492

Query: 422 GDHLNAKCHACIGGTNVREDIRQLEXG 502
              L   C    GG+ V + I +L+ G
Sbjct: 493 SKALGIICVPVYGGSGVAQQISELKRG 519


>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
           putative (RH30) strong similarity to ethylene-responsive
           RNA helicase [Lycopersicon esculentum] GI:5669638;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 591

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
 Frame = +2

Query: 254 QGRDVIAQAQSGTGQTATFSISILQLIDTSIRECQ-----ALILAPTRELAQQIQKVVIA 418
           +GRD+I  A++G+G+T  + +  L  +    R  Q      LILAPTRELA QIQ+    
Sbjct: 201 KGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRK 260

Query: 419 LGDHLNAKCHACIGGTNVREDIRQLEXGV 505
            G     +     GG      IR L  GV
Sbjct: 261 FGLRSGVRSTCIYGGAPKGPQIRDLRRGV 289


>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
           putative (RH30) strong similarity to ethylene-responsive
           RNA helicase [Lycopersicon esculentum] GI:5669638;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 484

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
 Frame = +2

Query: 254 QGRDVIAQAQSGTGQTATFSISILQLIDTSIRECQ-----ALILAPTRELAQQIQKVVIA 418
           +GRD+I  A++G+G+T  + +  L  +    R  Q      LILAPTRELA QIQ+    
Sbjct: 201 KGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRK 260

Query: 419 LGDHLNAKCHACIGGTNVREDIRQLEXGV 505
            G     +     GG      IR L  GV
Sbjct: 261 FGLRSGVRSTCIYGGAPKGPQIRDLRRGV 289


>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
           non-consensus acceptor splice site AT at exon 2; similar
           to DEAD box helicase protein GB:NP_006764 from [Homo
           sapiens], contains Pfam profile: PF00270  DEAD/DEAH box
           helicase
          Length = 568

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
 Frame = +2

Query: 248 LHQGRDVIAQAQSGTGQTATFSISILQLIDT---SIRE-CQALILAPTRELAQQIQKVVI 415
           L +G+DV+  A++G+G+T  F I  ++L+     S R     +++ PTRELA Q + V  
Sbjct: 123 LLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVAE 182

Query: 416 ALGDHLNAKCHACIGGTNVREDIRQLEXG 502
            L  H +      IGG N R + +++  G
Sbjct: 183 ELLKHHSQTVSMVIGGNNRRSEAQRIASG 211


>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
           similar to ethylene-responsive RNA helicase GI:5669638
           from [Lycopersicon esculentum]; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain
          Length = 501

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
 Frame = +2

Query: 254 QGRDVIAQAQSGTGQTATFSISILQLIDTSIRECQA-----LILAPTRELAQQIQKVVIA 418
           +GRD+I  A++G+G+T ++ +  +  ++             L+LAPTRELA QIQ+    
Sbjct: 135 KGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASK 194

Query: 419 LGDHLNAKCHACIGGTNVREDIRQLEXGV 505
            G     K     GG      +R L+ GV
Sbjct: 195 FGSSSKIKTTCIYGGVPKGPQVRDLQKGV 223


>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
           contains Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 505

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
 Frame = +2

Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDT--------SIRECQALILAPTRELAQQIQKVV 412
           G+ ++A A +G+G+TA+F + I+    T          R   A++LAPTREL  Q++   
Sbjct: 147 GKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQA 206

Query: 413 IALGDHLNAKCHACIGGTNVREDIRQLEXGV 505
             LG  L  K    +GG  +   + +++ GV
Sbjct: 207 KMLGKGLPFKTALVVGGDPMSGQLYRIQQGV 237


>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
           contains Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 368

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
 Frame = +2

Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDT--------SIRECQALILAPTRELAQQIQKVV 412
           G+ ++A A +G+G+TA+F + I+    T          R   A++LAPTREL  Q++   
Sbjct: 10  GKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQA 69

Query: 413 IALGDHLNAKCHACIGGTNVREDIRQLEXGV 505
             LG  L  K    +GG  +   + +++ GV
Sbjct: 70  KMLGKGLPFKTALVVGGDPMSGQLYRIQQGV 100


>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicase GB:6321111 from (S.
           cerevisiae)
          Length = 558

 Score = 43.6 bits (98), Expect = 9e-05
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
 Frame = +2

Query: 260 RDVIAQAQSGTGQTATFSISILQLIDTS------IRECQALILAPTRELAQQIQKVVIAL 421
           +DV+  A +G+G+T  F +  +++I  S        +   +I++PTREL+ QI KV    
Sbjct: 54  KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPF 113

Query: 422 GDHL-NAKCHACIGGTNVREDIRQLE 496
              L N      +GG  V  D+  LE
Sbjct: 114 VSTLPNVNSVLLVGGREVEADMNTLE 139


>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
           RNA helicase [Arabidopsis thaliana] GI:3776023; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 563

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
 Frame = +2

Query: 254 QGRDVIAQAQSGTGQTATFSISILQLI--------DTSIRECQALILAPTRELA-QQIQK 406
           QG+D++A+A++GTG+T  F +  ++ +        D        L++ PTRELA Q   +
Sbjct: 116 QGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAE 175

Query: 407 VVIALGDHLNAKCHACIGGTNVREDIRQLE 496
             I L  H +      IGGT +  + R+L+
Sbjct: 176 ANILLKYHPSIGVQVVIGGTKLPTEQRRLQ 205


>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
           to RNA helicase [Rattus norvegicus] GI:897915; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 760

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
 Frame = +2

Query: 257 GRDVIAQAQSGTGQTATFSI-SILQLIDTSIRECQ----ALILAPTRELAQQIQKVVIAL 421
           GRDVI  A++G+G+TA F +  I+ ++D    +       +I APTRELA QI       
Sbjct: 265 GRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKF 324

Query: 422 GDHLNAKCHACIGGTNVREDIRQLEXG 502
                 +  A  GG +  E  ++L+ G
Sbjct: 325 SKAYGLRVSAVYGGMSKHEQFKELKAG 351



 Score = 31.1 bits (67), Expect = 0.50
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 129 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
           D  + V+TF+D     +++  I    +EKP+AIQ +A+
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQAL 259


>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
           similar to RNA helicase GB:CAA09204 from [Arabidopsis
           thaliana]; identical to cDNA DEAD box RNA helicase, RH13
           GI:3776002
          Length = 832

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 20/106 (18%)
 Frame = +2

Query: 239 NNALHQGRDVIAQAQSGTGQTATFSISILQ-LIDTSIR----------ECQ--------- 358
           N A +QG+DVI  A++G+G+T  F + ILQ L+D   +          E Q         
Sbjct: 222 NVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLR 281

Query: 359 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 496
           ALI+ PTRELA Q+ + +     +L+ K    +GG    +  R+L+
Sbjct: 282 ALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLK 327


>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
           to p68 RNA helicase [Schizosaccharomyces pombe]
           GI:173419
          Length = 537

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
 Frame = +2

Query: 248 LHQGRDVIAQAQSGTGQTATFSI-SILQLIDTSIR--------ECQALILAPTRELAQQI 400
           L  GRD+I  A++G+G+T  F I +I+ ++  + +            L+L+PTRELA QI
Sbjct: 148 LLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQI 207

Query: 401 QKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGV 505
             V+   G+    K     GG++    I  +  GV
Sbjct: 208 SDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGV 242


>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
           similarity to RNA helicase RH26 [Arabidopsis thaliana]
           GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain; identical to cDNA DEAD box RNA helicase, RH26
           GI:3776024
          Length = 850

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
 Frame = +2

Query: 254 QGRDVIAQAQSGTGQTATFSISILQLI--------DTSIRECQALILAPTRELAQQ-IQK 406
           QG+DV+A+A++GTG+T  F +  ++ +        D+       L++ PTRELA Q   +
Sbjct: 418 QGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAE 477

Query: 407 VVIALGDHLNAKCHACIGGTNVREDIRQLE 496
               L  H +      IGGT +  + R+++
Sbjct: 478 ANTLLKYHPSIGVQVVIGGTKLPTEQRRMQ 507


>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 
          Length = 593

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
 Frame = +2

Query: 218 FCNP--ATRNNALHQGRDVIAQAQSGTGQTATFSISILQLIDTSI------RECQALILA 373
           FC P  A     L   +DV   A +G+G+T  F + +++++  S        +   +I++
Sbjct: 38  FCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIIS 97

Query: 374 PTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLE 496
           PTREL+ QI  V       L N      +GG  V+ D++ +E
Sbjct: 98  PTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIE 139


>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
           similarity to RNA helicase RH25 [Arabidopsis thaliana]
           GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain; identical to cDNA DEAD box RNA helicase, RH31
           GI:3776030
          Length = 522

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
 Frame = +2

Query: 254 QGRDVIAQAQSGTGQTATFSISILQLI--------DTSIRECQALILAPTRELAQQ-IQK 406
           +G+DV+A+A++GTG+T  F +  ++++        D       AL++ PTRELA Q   +
Sbjct: 90  KGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATE 149

Query: 407 VVIALGDHLNAKCHACIGGTNVREDIRQLE 496
               L  H +      IGGT +  + ++++
Sbjct: 150 ANTLLKYHPSIGVQVVIGGTRLGLEQKRMQ 179


>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
           helicase -Mus musculus,PIR2:I84741
          Length = 621

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
 Frame = +2

Query: 245 ALHQGRDVIAQAQSGTGQTATFSISILQLI---------DTSIRECQALILAPTRELAQQ 397
           A+ + + V+  + +G+G+T  + + I+QL+          T  R  + ++L PTREL++Q
Sbjct: 145 AVMERKSVVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQ 204

Query: 398 IQKVVIALGDHLNAKCHACIGGTNVR 475
           + +V  ++  H   +     GG+ +R
Sbjct: 205 VYRVAKSISHHARFRSILVSGGSRIR 230


>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
           RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 845

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
 Frame = +2

Query: 230 ATRNNALHQGRDVIAQAQSGTGQTATFSI----SILQLIDT-----SIRECQALILAPTR 382
           AT +  L  G+D + +A++GTG++  F +    ++L+ +++      +     LIL PTR
Sbjct: 404 ATLSECL-DGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTR 462

Query: 383 ELAQQIQKVVIA-LGDHLNAKCHACIGGTNVREDIRQLE 496
           ELA QI     A L +H        IGGT  R D ++LE
Sbjct: 463 ELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLE 501


>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
           RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 798

 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 12/101 (11%)
 Frame = +2

Query: 230 ATRNNALHQGRDVIAQAQSGTGQTATFSISILQLIDTSIRECQ---------ALILAPTR 382
           AT +  L  G+D + +A++GTG++  F +  ++ +  ++   +         ALIL PTR
Sbjct: 357 ATLSECL-DGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTR 415

Query: 383 ELAQQIQ---KVVIALGDHLNAKCHACIGGTNVREDIRQLE 496
           ELA QI    K ++   D +  +    IGGT  + D ++LE
Sbjct: 416 ELASQIAAEGKALLKFHDGIGVQ--TLIGGTRFKLDQQRLE 454


>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
           identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
          Length = 626

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 6/62 (9%)
 Frame = +2

Query: 254 QGRDVIAQAQSGTGQTATFSISILQLI---DTSIRE---CQALILAPTRELAQQIQKVVI 415
           +G+DV+A+A++G+G+T  + + +LQ +   D+  ++     A IL P+REL QQ+   V 
Sbjct: 82  EGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVS 141

Query: 416 AL 421
           +L
Sbjct: 142 SL 143



 Score = 32.7 bits (71), Expect = 0.16
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +3

Query: 135 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
           ++  ++F+++ L   L+R +   G EKP+ IQQ AI
Sbjct: 42  EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAI 77


>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
           Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 465

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
 Frame = +2

Query: 260 RDVIAQAQSGTGQTATFSISILQLIDTSI------RECQALILAPTRELAQQIQKVVIAL 421
           +DV+  A +G+G+T  F +  +++I  S        +   +I++PTREL+ QI KV  A+
Sbjct: 55  KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAV 114

Query: 422 GDHLNAKCHACIGGTNVRED 481
                AKC       N  E+
Sbjct: 115 RLDF-AKCREVEADMNTLEE 133


>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
           Pfam profiles  PF00270:DEAD/DEAH box helicase and
           PF00271:  Helicase conserved C-terminal domain;
           identical to cDNA RH27 helicase, partial GI:4033334
          Length = 633

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
 Frame = +2

Query: 248 LHQGRDVIAQAQSGTGQTATFSISILQLI----DTSIRECQALILAPTRELAQQIQKVVI 415
           L  G DV+  A++G+G+T  F I  ++L+     T       L++ PTRELA Q   V  
Sbjct: 188 LMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAK 247

Query: 416 ALGDHLNAKCHACIGGTNVREDIRQLEXGVH 508
            L  + +      IGG   + +   L  GV+
Sbjct: 248 ELLKYHSQTVGKVIGGEKRKTEAEILAKGVN 278


>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 
          Length = 739

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
 Frame = +2

Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQ----ALILAPTRELAQQIQKVVIALG 424
           GRD++  A++G+G+T  F I IL+ +       +     +I++PTRELA Q   V+  +G
Sbjct: 108 GRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVG 167

Query: 425 DHLNAKCHACIGG 463
                     IGG
Sbjct: 168 KFHKFSAGLLIGG 180


>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
           helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
          Length = 542

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 14/98 (14%)
 Frame = +2

Query: 257 GRDVIAQAQSGTGQTATFSISILQL-----IDTSIRECQ---ALILAPTRELAQQ----I 400
           GRD+I  A +G+G+T  F + ++ L     I   I   +   AL++ P+RELA+Q    +
Sbjct: 134 GRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVV 193

Query: 401 QKVVIALGD--HLNAKCHACIGGTNVREDIRQLEXGVH 508
           ++ V +L +  +   +   CIGG ++R  +  ++ GVH
Sbjct: 194 EQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVH 231


>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 
          Length = 591

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 14/98 (14%)
 Frame = +2

Query: 257 GRDVIAQAQSGTGQTATFSISILQLI--DTSIRECQA------LILAPTRELAQQIQKVV 412
           GRD+I  A +G+G+T  F + ++ +   +  +    A      LI+ P+RELA+Q  +VV
Sbjct: 183 GRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVV 242

Query: 413 ------IALGDHLNAKCHACIGGTNVREDIRQLEXGVH 508
                 +    +   +   CIGG ++R  +  ++ GVH
Sbjct: 243 EQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVH 280


>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
           identical to RNA helicase [Arabidopsis thaliana]
           GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 671

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
 Frame = +2

Query: 257 GRDVIAQAQSGTGQTATFSISILQ-LIDTSI---------RECQALILAPTRELAQQIQK 406
           G D++ +A++G G+T  F + IL+ L++            R    L+L PTRELA+Q+  
Sbjct: 133 GADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAA 192

Query: 407 VVIALGDHLNAKCHACIGGTNVREDIRQLEXGV 505
              A G  L        GG +      +L+ GV
Sbjct: 193 DFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGV 225


>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
           pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profiles:  PF00271 helicase conserved
           C-terminal domain, PF01535 PPR repeat, PF00270:
           DEAD/DEAH box helicase
          Length = 1145

 Score = 35.1 bits (77), Expect = 0.031
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
 Frame = +2

Query: 245 ALHQGRDVIAQAQSGTGQTATFSISILQLI-------------DTSIRECQALILAPTRE 385
           A+ +G D + Q+ +G+G+T  + + IL  I             +    E QA+I+AP+RE
Sbjct: 143 AIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRE 202

Query: 386 LAQQI-QKVVIALGDHLNAKCHACIGGTN 469
           L  QI ++V   LG          +GG N
Sbjct: 203 LGMQIVREVEKLLGPVHRRMVQQLVGGAN 231


>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
           to RNA helicase involved in rRNA processing GB:6321267
           from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
           box domain
          Length = 541

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +2

Query: 248 LHQGRDVIAQAQSGTGQTATFSISIL-QLIDTSIRECQALILAPTRELAQQ 397
           L  GR+  A A +G+G+T  F   +L +L   S    +A+IL+P RELA Q
Sbjct: 175 LLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQ 225


>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
           identical to GB:CAA09207, contains a DEAD/DEAH box
           family ATP-dependent helicas signature; identical to
           cDNA DEAD box RNA helicase, RH17 GI:3776008
          Length = 609

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
 Frame = +2

Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQ------ALILAPTRELAQQIQKVV 412
           GRDV+  A +GTG+T  +   ++  +     +        AL++ PTREL  Q+ + +
Sbjct: 67  GRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETL 124


>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
           Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 781

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
 Frame = +2

Query: 257 GRDVIAQAQSGTGQTATFSISILQLI--------DTSIREC-QALILAPTRELAQQIQKV 409
           G+  I   QSG+G+T  + + ++Q +          S   C + ++L PT ELA Q+   
Sbjct: 411 GKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLAN 470

Query: 410 VIALG-DHLNAKCHACIGGTNVREDIRQLEXGV 505
             ++    +  +     GG   R  +  LE GV
Sbjct: 471 CRSISKSGVPFRSMVVTGGFRQRTQLENLEQGV 503


>At3g10020.1 68416.m01202 expressed protein
          Length = 149

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 63  GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQR 236
           GP +  D      PP MD G  + D +QV ++ DD+ +  EL++G      E P+ + + 
Sbjct: 83  GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAV--ELVKGEVEVAKEAPAGVARV 140

Query: 237 AIMP 248
            + P
Sbjct: 141 EVDP 144


>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
           family protein / ankyrin repeat family protein contains
           Pfam profile: PF00097 zinc finger, C3HC4 type (RING
           finger) and Pfam profile: PF00023 ankyrin repeat
          Length = 376

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 362 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 466
           LILA T +    + K ++ LG ++NA    C GGT
Sbjct: 46  LILACTNDDLYDVAKTLLELGSNVNAYRSGCNGGT 80


>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 691

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
 Frame = +2

Query: 311 SISILQLIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 463
           +++ L+ +  +++EC +A+ + P+   A Q++  + + LG+  NA+ H C  G
Sbjct: 263 ALTALRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSG 315


>At1g76010.1 68414.m08825 expressed protein
          Length = 350

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = +3

Query: 18  SSERRSEDWPEDSK---NGPSKDQGSYDGPPGMDPG 116
           S  R   D P   +   +GPS+ +G YDGP G   G
Sbjct: 282 SQGRGGYDGPSQGRGGYDGPSQGRGGYDGPQGRGRG 317


>At5g53760.1 68418.m06680 seven transmembrane MLO family protein /
           MLO-like protein 11 (MLO11) identical to membrane
           protein Mlo11 [Arabidopsis thaliana]
           gi|14091592|gb|AAK53804; similar to MLO protein
           SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
           vulgare][Barley]
          Length = 573

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 380 LWEPGSKLDIHECLYRLVVESI*RK-*QFVQFLT 282
           +WE  ++LD H+CL  +  E I R+   FVQ+ T
Sbjct: 192 IWEDVARLDRHDCLTAVAREKIFRRQTTFVQYHT 225


>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 682

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +2

Query: 332 IDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 463
           ++ +++EC +A+   P+   A Q++  + + LG+  NA+ H C+ G
Sbjct: 261 LEEAVKECLEAVRCDPSYARAHQRLASLYLRLGEAENARRHLCVSG 306


>At5g03500.1 68418.m00306 transcriptional co-activator-related low
           similarity to transcriptional co-activator CRSP33 [Homo
           sapiens] GI:4220890
          Length = 443

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 496 LQLANIFTDIGATNASMAFSIQVITKSYHHLLNLL 392
           L+LA++  D  +  A     I  I K+ HHLLN L
Sbjct: 86  LELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120


>At5g03220.1 68418.m00270 transcriptional co-activator-related
           contains weak similarity to Cofactor required for Sp1
           transcriptional activation subunit 9 (Transcriptional
           co-activator CRSP33) (RNA polymerase transcriptional
           regulation mediator subunit 7 homolog) (hMED7)
           (Activator-recruited cofactor 34 kDa component) (ARC34)
           (Swiss-Prot:O43513) [Homo sapiens]
          Length = 168

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 496 LQLANIFTDIGATNASMAFSIQVITKSYHHLLNLL 392
           L+LA++  D  +  A     I  I K+ HHLLN L
Sbjct: 86  LELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,092,279
Number of Sequences: 28952
Number of extensions: 282024
Number of successful extensions: 995
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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