BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0254 (546 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 121 3e-28 At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 119 1e-27 At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 118 2e-27 At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 118 3e-27 At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 107 4e-24 At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 79 2e-15 At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 79 2e-15 At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 76 1e-14 At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 76 1e-14 At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 71 7e-13 At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 61 5e-10 At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 58 5e-09 At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 58 5e-09 At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 57 7e-09 At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 57 9e-09 At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 56 1e-08 At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 56 2e-08 At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 56 2e-08 At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 54 8e-08 At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 53 1e-07 At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 53 1e-07 At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 52 3e-07 At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 52 3e-07 At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 52 3e-07 At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 52 3e-07 At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 52 3e-07 At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 51 4e-07 At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 51 6e-07 At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 51 6e-07 At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 50 1e-06 At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 49 2e-06 At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 49 2e-06 At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 47 9e-06 At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 47 9e-06 At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 47 9e-06 At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 46 1e-05 At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 46 1e-05 At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 46 1e-05 At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 46 1e-05 At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 46 2e-05 At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 46 2e-05 At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 44 9e-05 At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 43 1e-04 At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 43 2e-04 At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 42 2e-04 At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 42 2e-04 At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 42 3e-04 At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 42 3e-04 At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 41 5e-04 At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 41 5e-04 At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 41 5e-04 At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 40 8e-04 At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 40 0.001 At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 40 0.001 At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 39 0.003 At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 39 0.003 At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 38 0.003 At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 38 0.006 At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 37 0.008 At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 35 0.031 At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 33 0.12 At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 32 0.29 At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 30 0.88 At3g10020.1 68416.m01202 expressed protein 29 1.5 At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa... 29 2.0 At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi... 29 2.0 At1g76010.1 68414.m08825 expressed protein 28 4.7 At5g53760.1 68418.m06680 seven transmembrane MLO family protein ... 27 6.2 At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi... 27 6.2 At5g03500.1 68418.m00306 transcriptional co-activator-related lo... 27 8.2 At5g03220.1 68418.m00270 transcriptional co-activator-related co... 27 8.2 >At3g13920.1 68416.m01758 eukaryotic translation initiation factor 4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485; contains Pfam profile PF00270: DEAD/DEAH box helicase; contains Pfam profile PF00271: Helicase conserved C-terminal domain Length = 412 Score = 121 bits (292), Expect = 3e-28 Identities = 57/85 (67%), Positives = 70/85 (82%) Frame = +2 Query: 254 QGRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433 +G DVI QAQSGTG+TATF +LQ +D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L Sbjct: 75 KGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYL 134 Query: 434 NAKCHACIGGTNVREDIRQLEXGVH 508 K HAC+GGT+VRED R L+ GVH Sbjct: 135 GVKVHACVGGTSVREDQRILQAGVH 159 Score = 66.9 bits (156), Expect = 8e-12 Identities = 31/44 (70%), Positives = 35/44 (79%) Frame = +3 Query: 126 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 257 T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P K Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK 75 Score = 27.5 bits (58), Expect = 6.2 Identities = 10/13 (76%), Positives = 13/13 (100%) Frame = +1 Query: 508 LVVGTPGRVYDMI 546 +VVGTPGRV+DM+ Sbjct: 160 VVVGTPGRVFDML 172 >At1g72730.1 68414.m08410 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative similar to Eukaryotic initiation factor 4A-10 GB:P41382 [Nicotiana tabacum]; identical to (putative) RNA helicase GB:CAA09211 [Arabidopsis thaliana] (Nucleic Acids Res. 27 (2), 628-636 (1999)) Length = 414 Score = 119 bits (287), Expect = 1e-27 Identities = 56/85 (65%), Positives = 69/85 (81%) Frame = +2 Query: 254 QGRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433 +G DVI QAQSGTG+TATF +LQ +D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L Sbjct: 77 KGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYL 136 Query: 434 NAKCHACIGGTNVREDIRQLEXGVH 508 K AC+GGT+VRED R L+ GVH Sbjct: 137 GVKAQACVGGTSVREDQRVLQSGVH 161 Score = 66.9 bits (156), Expect = 8e-12 Identities = 30/47 (63%), Positives = 38/47 (80%) Frame = +3 Query: 117 TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 257 T T++D+V ++FD M L+ +LLRGIYAYGFEKPSAIQQR I+P K Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCK 77 >At3g19760.1 68416.m02501 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative contains DEAD/DEAH helicase domain; similar to RNA helicase GB:CAA09195 from [Arabidopsis thaliana]; identical to cDNA DEAD box RNA helicase, RH2 GI:3775984 Length = 408 Score = 118 bits (285), Expect = 2e-27 Identities = 55/85 (64%), Positives = 69/85 (81%) Frame = +2 Query: 254 QGRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433 QGRDVIAQAQSGTG+T+ ++S+ Q++DTS RE QALIL+PTRELA Q +K + A+G H Sbjct: 71 QGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHA 130 Query: 434 NAKCHACIGGTNVREDIRQLEXGVH 508 N + HACIGG +V EDIR+LE GVH Sbjct: 131 NIQAHACIGGNSVGEDIRKLEHGVH 155 Score = 64.5 bits (150), Expect = 4e-11 Identities = 26/44 (59%), Positives = 37/44 (84%) Frame = +3 Query: 126 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 257 TD + + +F+DM +KE++LRG+Y YGFEKPSAIQQRA+MP ++ Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQ 71 >At1g54270.1 68414.m06187 eukaryotic translation initiation factor 4A-2 / eIF-4A-2 similar to eukaryotic translation initiation factor 4A GI:19696 from [Nicotiana plumbaginifolia] Length = 412 Score = 118 bits (284), Expect = 3e-27 Identities = 55/85 (64%), Positives = 69/85 (81%) Frame = +2 Query: 254 QGRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433 +G DVI QAQSGTG+TATF +LQ +D ++ +CQAL+LAPTRELAQQI+KV+ ALGD+ Sbjct: 75 KGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQ 134 Query: 434 NAKCHACIGGTNVREDIRQLEXGVH 508 K HAC+GGT+VRED R L+ GVH Sbjct: 135 GVKVHACVGGTSVREDQRILQAGVH 159 Score = 67.7 bits (158), Expect = 5e-12 Identities = 31/44 (70%), Positives = 36/44 (81%) Frame = +3 Query: 126 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 257 T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P K Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK 75 Score = 27.5 bits (58), Expect = 6.2 Identities = 10/13 (76%), Positives = 13/13 (100%) Frame = +1 Query: 508 LVVGTPGRVYDMI 546 +VVGTPGRV+DM+ Sbjct: 160 VVVGTPGRVFDML 172 >At1g51380.1 68414.m05780 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative Length = 392 Score = 107 bits (258), Expect = 4e-24 Identities = 47/85 (55%), Positives = 67/85 (78%) Frame = +2 Query: 254 QGRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433 +GRDVIAQAQSGTG+T+ +IS+ Q+++ S R+ Q L+L+P+RELA Q +K + A+G H Sbjct: 58 KGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHT 117 Query: 434 NAKCHACIGGTNVREDIRQLEXGVH 508 N + HACIGG ++ EDI++LE GVH Sbjct: 118 NIQAHACIGGKSIGEDIKKLERGVH 142 Score = 55.6 bits (128), Expect = 2e-08 Identities = 20/38 (52%), Positives = 33/38 (86%) Frame = +3 Query: 144 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 257 +++FDDM + +++LRG+Y YG++KPS IQQRA++P +K Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILK 58 Score = 27.1 bits (57), Expect = 8.2 Identities = 11/12 (91%), Positives = 11/12 (91%) Frame = +1 Query: 511 VVGTPGRVYDMI 546 V GTPGRVYDMI Sbjct: 144 VSGTPGRVYDMI 155 >At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar to ATP-dependent RNA helicases Length = 505 Score = 79.0 bits (186), Expect = 2e-15 Identities = 38/84 (45%), Positives = 55/84 (65%) Frame = +2 Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436 GRD++A+A++GTG+TA F I +L+ ID QA+I+ PTRELA Q +V LG HL Sbjct: 168 GRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLK 227 Query: 437 AKCHACIGGTNVREDIRQLEXGVH 508 + GGT++++DI +L VH Sbjct: 228 IQVMVTTGGTSLKDDIMRLYQPVH 251 Score = 40.3 bits (90), Expect = 8e-04 Identities = 18/30 (60%), Positives = 22/30 (73%) Frame = +3 Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242 F+D LK ELL GIY GFE+PS IQ+ +I Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESI 162 >At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar to ATP-dependent RNA helicases Length = 505 Score = 79.0 bits (186), Expect = 2e-15 Identities = 38/84 (45%), Positives = 55/84 (65%) Frame = +2 Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436 GRD++A+A++GTG+TA F I +L+ ID QA+I+ PTRELA Q +V LG HL Sbjct: 168 GRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLK 227 Query: 437 AKCHACIGGTNVREDIRQLEXGVH 508 + GGT++++DI +L VH Sbjct: 228 IQVMVTTGGTSLKDDIMRLYQPVH 251 Score = 40.3 bits (90), Expect = 8e-04 Identities = 18/30 (60%), Positives = 22/30 (73%) Frame = +3 Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242 F+D LK ELL GIY GFE+PS IQ+ +I Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESI 162 >At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12) identical to cDNA DEAD box RNA helicase, RH12 GI:3776000 Length = 498 Score = 76.2 bits (179), Expect = 1e-14 Identities = 37/84 (44%), Positives = 54/84 (64%) Frame = +2 Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436 G D++A+A++GTG+T F I +L+ ID + QA+IL PTRELA Q +V L +LN Sbjct: 161 GSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLN 220 Query: 437 AKCHACIGGTNVREDIRQLEXGVH 508 + GGT++R+DI +L VH Sbjct: 221 IQVMVTTGGTSLRDDIMRLHQPVH 244 Score = 41.5 bits (93), Expect = 4e-04 Identities = 18/30 (60%), Positives = 23/30 (76%) Frame = +3 Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242 F+D LK +LL+GIY GFEKPS IQ+ +I Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESI 155 >At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12) identical to cDNA DEAD box RNA helicase, RH12 GI:3776000 Length = 498 Score = 76.2 bits (179), Expect = 1e-14 Identities = 37/84 (44%), Positives = 54/84 (64%) Frame = +2 Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436 G D++A+A++GTG+T F I +L+ ID + QA+IL PTRELA Q +V L +LN Sbjct: 161 GSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLN 220 Query: 437 AKCHACIGGTNVREDIRQLEXGVH 508 + GGT++R+DI +L VH Sbjct: 221 IQVMVTTGGTSLRDDIMRLHQPVH 244 Score = 41.5 bits (93), Expect = 4e-04 Identities = 18/30 (60%), Positives = 23/30 (76%) Frame = +3 Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242 F+D LK +LL+GIY GFEKPS IQ+ +I Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESI 155 >At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative Length = 528 Score = 70.5 bits (165), Expect = 7e-13 Identities = 36/84 (42%), Positives = 51/84 (60%) Frame = +2 Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436 G D++A+A++GTG+T F I L+ ID QA+IL PTRELA Q +V L +L Sbjct: 191 GSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLK 250 Query: 437 AKCHACIGGTNVREDIRQLEXGVH 508 + GGT++R+DI +L VH Sbjct: 251 IEVMVTTGGTSLRDDIMRLYQPVH 274 Score = 42.7 bits (96), Expect = 2e-04 Identities = 19/30 (63%), Positives = 23/30 (76%) Frame = +3 Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242 F+D LK +LLRGIY GFEKPS IQ+ +I Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESI 185 >At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar to gb|L13612 DEAD-box protein (dbp45A) from Drosophila melanogaster and is a member of PF|00270 DEAD/DEAH box helicase family Length = 491 Score = 60.9 bits (141), Expect = 5e-10 Identities = 30/72 (41%), Positives = 45/72 (62%) Frame = +2 Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436 GRDV+ AQ+G+G+TA F++ IL + AL++ PTRELA Q+ + ALG LN Sbjct: 95 GRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLN 154 Query: 437 AKCHACIGGTNV 472 +C +GG ++ Sbjct: 155 LRCSVIVGGMDM 166 >At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative Length = 427 Score = 57.6 bits (133), Expect = 5e-09 Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Frame = +2 Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 433 G DVI QA+SG G+TA F +S LQ I+ S + AL+L TRELA QI + +L Sbjct: 83 GMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLP 142 Query: 434 NAKCHACIGGTNVR 475 + K GG N++ Sbjct: 143 DTKVSVFYGGVNIK 156 Score = 33.1 bits (72), Expect = 0.12 Identities = 19/41 (46%), Positives = 22/41 (53%) Frame = +3 Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKDAMLSL 275 F D LK ELLR I GFE PS +Q CI A+L + Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHE----CIPQAILGM 84 >At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15) DEAD BOX RNA helicase RH15, Arabidopsis thaliana, EMBL:ATH010466 Length = 427 Score = 57.6 bits (133), Expect = 5e-09 Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Frame = +2 Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 433 G DVI QA+SG G+TA F +S LQ I+ S + AL+L TRELA QI + +L Sbjct: 83 GMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLP 142 Query: 434 NAKCHACIGGTNVR 475 + K GG N++ Sbjct: 143 DTKVSVFYGGVNIK 156 Score = 33.1 bits (72), Expect = 0.12 Identities = 19/41 (46%), Positives = 22/41 (53%) Frame = +3 Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKDAMLSL 275 F D LK ELLR I GFE PS +Q CI A+L + Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHE----CIPQAILGM 84 >At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to RNA helicases GI:3775995, GI:3775987 from [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 616 Score = 57.2 bits (132), Expect = 7e-09 Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 6/90 (6%) Frame = +2 Query: 254 QGRDVIAQAQSGTGQTATFSISIL-QLIDTSI-----RECQALILAPTRELAQQIQKVVI 415 +GRD+I +A++GTG+T F I I+ ++I + R L+LAPTRELA+Q++K Sbjct: 140 EGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFR 199 Query: 416 ALGDHLNAKCHACIGGTNVREDIRQLEXGV 505 L+ C GGT + + +RQL+ GV Sbjct: 200 ESAPSLDTIC--LYGGTPIGQQMRQLDYGV 227 >At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar to RNA helicase GI:3776027 from [Arabidopsis thaliana] Length = 513 Score = 56.8 bits (131), Expect = 9e-09 Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 2/84 (2%) Frame = +2 Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRE--CQALILAPTRELAQQIQKVVIALGDH 430 G DV+A A++G+G+TA F I +L+ + + + +ALIL+PTR+LA+Q K LG Sbjct: 65 GVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKF 124 Query: 431 LNAKCHACIGGTNVREDIRQLEXG 502 + + +GG ++ + +L G Sbjct: 125 TDLRVSLLVGGDSMEDQFEELTKG 148 >At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) similar to RNA helicases GI:3775995, GI:3775987 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 610 Score = 56.4 bits (130), Expect = 1e-08 Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 6/90 (6%) Frame = +2 Query: 254 QGRDVIAQAQSGTGQTATFSISIL-QLIDTSI-----RECQALILAPTRELAQQIQKVVI 415 +GRD+I +A++GTG+T F I I+ ++I + + Q L+LAPTRELA+Q++K Sbjct: 152 EGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFR 211 Query: 416 ALGDHLNAKCHACIGGTNVREDIRQLEXGV 505 L+ C GGT + + +R+L G+ Sbjct: 212 ESAPSLDTIC--LYGGTPIGQQMRELNYGI 239 >At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28) identical to cDNA DEAD box RNA helicase, RH28 GI:3776026 Length = 789 Score = 56.0 bits (129), Expect = 2e-08 Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 3/77 (3%) Frame = +2 Query: 257 GRDVIAQAQSGTGQTATFSISILQLI---DTSIRECQALILAPTRELAQQIQKVVIALGD 427 GRD+ A A +G+G+TA F++ L+ + + + LIL PTRELA QI ++ L Sbjct: 204 GRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQ 263 Query: 428 HLNAKCHACIGGTNVRE 478 + KC +GG +VRE Sbjct: 264 FTDIKCGLIVGGLSVRE 280 Score = 30.3 bits (65), Expect = 0.88 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +3 Query: 147 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242 +TF ++NL LLR G++KP+ IQ I Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACI 198 >At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15) DEAD BOX RNA helicase RH15, Arabidopsis thaliana, EMBL:ATH010466 Length = 344 Score = 55.6 bits (128), Expect = 2e-08 Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Frame = +2 Query: 263 DVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 439 DVI QA+SG G+TA F +S LQ I+ S + AL+L TRELA QI + +L + Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 61 Query: 440 KCHACIGGTNVR 475 K GG N++ Sbjct: 62 KVSVFYGGVNIK 73 >At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo sapiens] GI:3523150; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 633 Score = 53.6 bits (123), Expect = 8e-08 Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 10/96 (10%) Frame = +2 Query: 248 LHQGRDVIAQAQSGTGQTATFSISILQLI--DTSIRECQ--------ALILAPTRELAQQ 397 L +GRD++A AQ+G+G+TA F I+ I D ++ + A+IL+PTRELA Q Sbjct: 193 LLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQ 252 Query: 398 IQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGV 505 I K GGT + + +R+LE GV Sbjct: 253 IHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGV 288 >At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo sapiens] GI:3523150; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 646 Score = 53.2 bits (122), Expect = 1e-07 Identities = 41/105 (39%), Positives = 52/105 (49%), Gaps = 12/105 (11%) Frame = +2 Query: 227 PATRNNA--LHQGRDVIAQAQSGTGQTATFSISILQLI--DTSIRECQ--------ALIL 370 P RN L GRD++A AQ+G+G+TA F I+ I D I + A+IL Sbjct: 171 PVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVIL 230 Query: 371 APTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGV 505 +PTRELA QI K GGT V + IR+LE GV Sbjct: 231 SPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGV 275 >At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA helicase, Mus musculus, PIR:I49731 Length = 496 Score = 52.8 bits (121), Expect = 1e-07 Identities = 24/55 (43%), Positives = 38/55 (69%) Frame = +2 Query: 260 RDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKVVIALG 424 + +IAQA +G+G+T F + +L +D ++RE QAL + PTRELA Q +V+ +G Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMG 186 Score = 33.9 bits (74), Expect = 0.071 Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%) Frame = +3 Query: 153 FDDMNLKEELLRGIYA-YGFEKPSAIQ 230 F+D+NL EL++G+Y FEKPS IQ Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQ 119 >At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo sapiens, SWISSPROT:IF42_HUMAN Length = 472 Score = 52.0 bits (119), Expect = 3e-07 Identities = 25/54 (46%), Positives = 34/54 (62%) Frame = +2 Query: 248 LHQGRDVIAQAQSGTGQTATFSISILQLIDTSIRECQALILAPTRELAQQIQKV 409 L GRD I AQ+G+G+T T+ + I LI+ QA+I+ PTREL Q+ KV Sbjct: 110 LFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKV 163 >At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 619 Score = 52.0 bits (119), Expect = 3e-07 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 4/87 (4%) Frame = +2 Query: 254 QGRDVIAQAQSGTGQTATFSIS---ILQLIDTSIRECQA-LILAPTRELAQQIQKVVIAL 421 QGRD++A A++G+G+T + I LQ I R L+L+PTRELA QIQ+ + Sbjct: 194 QGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKF 253 Query: 422 GDHLNAKCHACIGGTNVREDIRQLEXG 502 G C GG +R LE G Sbjct: 254 GRSSRISCTCLYGGAPKGPQLRDLERG 280 >At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 619 Score = 52.0 bits (119), Expect = 3e-07 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 4/87 (4%) Frame = +2 Query: 254 QGRDVIAQAQSGTGQTATFSIS---ILQLIDTSIRECQA-LILAPTRELAQQIQKVVIAL 421 QGRD++A A++G+G+T + I LQ I R L+L+PTRELA QIQ+ + Sbjct: 194 QGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKF 253 Query: 422 GDHLNAKCHACIGGTNVREDIRQLEXG 502 G C GG +R LE G Sbjct: 254 GRSSRISCTCLYGGAPKGPQLRDLERG 280 >At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 618 Score = 52.0 bits (119), Expect = 3e-07 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 4/87 (4%) Frame = +2 Query: 254 QGRDVIAQAQSGTGQTATFSIS---ILQLIDTSIRECQA-LILAPTRELAQQIQKVVIAL 421 QGRD++A A++G+G+T + I LQ I R L+L+PTRELA QIQ+ + Sbjct: 194 QGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKF 253 Query: 422 GDHLNAKCHACIGGTNVREDIRQLEXG 502 G C GG +R LE G Sbjct: 254 GRSSRISCTCLYGGAPKGPQLRDLERG 280 >At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28 {Saccharomyces cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 733 Score = 51.6 bits (118), Expect = 3e-07 Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 8/91 (8%) Frame = +2 Query: 254 QGRDVIAQAQSGTGQTATFSISILQLID-----TSIRECQ---ALILAPTRELAQQIQKV 409 Q RDVI A++G+G+TA F + +L I + E + A+++APTRELAQQI++ Sbjct: 349 QQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEE 408 Query: 410 VIALGDHLNAKCHACIGGTNVREDIRQLEXG 502 + +L + + +GG ++ E ++ G Sbjct: 409 TVKFAHYLGFRVTSIVGGQSIEEQGLKITQG 439 Score = 29.5 bits (63), Expect = 1.5 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = +3 Query: 144 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242 + ++++ L ELL+ + G++KPS IQ AI Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAI 344 >At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly identical to RNA helicase [Arabidopsis thaliana] GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF00098: Zinc knuckle Length = 747 Score = 51.2 bits (117), Expect = 4e-07 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 10/74 (13%) Frame = +2 Query: 254 QGRDVIAQAQSGTGQTATFSISILQLID------TSIREC----QALILAPTRELAQQIQ 403 QGRD+IA+A++GTG+T F I I++ + T+ R + L+LAPTRELA+Q++ Sbjct: 138 QGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVE 197 Query: 404 KVVIALGDHLNAKC 445 K + +L+ C Sbjct: 198 KEIKESAPYLSTVC 211 >At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10) probable replication protein A1, Oryza sativa, EMBL:AF009179 Length = 456 Score = 50.8 bits (116), Expect = 6e-07 Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 12/82 (14%) Frame = +2 Query: 254 QGRDVIAQAQSGTGQTATFSISILQLIDTSIRECQ------------ALILAPTRELAQQ 397 +G+DVI AQ+G+G+T F+I ILQ + + + + A +L+PTRELA Q Sbjct: 45 EGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQ 104 Query: 398 IQKVVIALGDHLNAKCHACIGG 463 I + ALG ++ +C +GG Sbjct: 105 IAEQFEALGADISLRCAVLVGG 126 Score = 33.1 bits (72), Expect = 0.12 Identities = 13/36 (36%), Positives = 25/36 (69%) Frame = +3 Query: 135 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242 ++VV+TF ++ ++EEL++ G++ PS IQ A+ Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEAL 40 >At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF00397: WW domain Length = 1088 Score = 50.8 bits (116), Expect = 6e-07 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 4/87 (4%) Frame = +2 Query: 254 QGRDVIAQAQSGTGQTATFSISILQLI----DTSIRECQALILAPTRELAQQIQKVVIAL 421 Q RD++A A++G+G+T + I L+ + S LILAPTRELA QIQ + Sbjct: 471 QSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALRF 530 Query: 422 GDHLNAKCHACIGGTNVREDIRQLEXG 502 G C GG +++LE G Sbjct: 531 GRSSRISCTCLYGGAPKGPQLKELERG 557 >At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar to D-E-A-D box protein [Drosophila melanogaster] GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 512 Score = 49.6 bits (113), Expect = 1e-06 Identities = 23/79 (29%), Positives = 49/79 (62%), Gaps = 1/79 (1%) Frame = +2 Query: 260 RDVIAQAQSGTGQTATFSISILQLI-DTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436 RD+ + +G+G+T ++++ I+QL+ +R +AL++ PTR+LA Q++ V A+ + Sbjct: 63 RDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVG 122 Query: 437 AKCHACIGGTNVREDIRQL 493 + +G +++ +I QL Sbjct: 123 LSVGSAVGQSSIAGEISQL 141 >At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF00397: WW domain Length = 713 Score = 49.2 bits (112), Expect = 2e-06 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 4/88 (4%) Frame = +2 Query: 254 QGRDVIAQAQSGTGQTATFSIS---ILQLIDTSIRECQA-LILAPTRELAQQIQKVVIAL 421 Q RD++A A++G+G+T + I LQ I R L+L+PTRELA QIQ + Sbjct: 265 QNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKF 324 Query: 422 GDHLNAKCHACIGGTNVREDIRQLEXGV 505 G C GG ++++E GV Sbjct: 325 GKSSKISCACLYGGAPKGPQLKEIERGV 352 >At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to RNA helicase [Rattus norvegicus] GI:897915; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 1166 Score = 49.2 bits (112), Expect = 2e-06 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 5/87 (5%) Frame = +2 Query: 257 GRDVIAQAQSGTGQTATFSISILQLI-DTSIRECQ----ALILAPTRELAQQIQKVVIAL 421 GRD I A++G+G+T F + +L+ I D E L++APTREL QQI + Sbjct: 566 GRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKF 625 Query: 422 GDHLNAKCHACIGGTNVREDIRQLEXG 502 L +C GG+ V + I +L+ G Sbjct: 626 SKPLGIRCVPVYGGSGVAQQISELKRG 652 >At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) similar to RNA helicase DBY protein [Mus musculus] GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain; identical to cDNA DEAD box RNA helicase, RH11 GI:3775998 Length = 612 Score = 46.8 bits (106), Expect = 9e-06 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 10/91 (10%) Frame = +2 Query: 260 RDVIAQAQSGTGQTATFSISILQLI--DTSIRECQ--------ALILAPTRELAQQIQKV 409 RD++A AQ+G+G+TA F I+ I D + + A+IL+PTRELA QI Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248 Query: 410 VIALGDHLNAKCHACIGGTNVREDIRQLEXG 502 K GGT + + +R+LE G Sbjct: 249 AKKFSYQTGVKVVVAYGGTPIHQQLRELERG 279 >At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) similar to RNA helicase DBY protein [Mus musculus] GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain; identical to cDNA DEAD box RNA helicase, RH11 GI:3775998 Length = 612 Score = 46.8 bits (106), Expect = 9e-06 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 10/91 (10%) Frame = +2 Query: 260 RDVIAQAQSGTGQTATFSISILQLI--DTSIRECQ--------ALILAPTRELAQQIQKV 409 RD++A AQ+G+G+TA F I+ I D + + A+IL+PTRELA QI Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248 Query: 410 VIALGDHLNAKCHACIGGTNVREDIRQLEXG 502 K GGT + + +R+LE G Sbjct: 249 AKKFSYQTGVKVVVAYGGTPIHQQLRELERG 279 >At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar to RNA helicase GB:A57514 GI:897915 from [Rattus norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 989 Score = 46.8 bits (106), Expect = 9e-06 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 5/87 (5%) Frame = +2 Query: 257 GRDVIAQAQSGTGQTATFSISILQLI-DTSIRECQ----ALILAPTRELAQQIQKVVIAL 421 GRD I A++G+G+T F + +L+ I D E L++APTREL QQI + Sbjct: 433 GRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKF 492 Query: 422 GDHLNAKCHACIGGTNVREDIRQLEXG 502 L C GG+ V + I +L+ G Sbjct: 493 SKALGIICVPVYGGSGVAQQISELKRG 519 >At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase, putative (RH30) strong similarity to ethylene-responsive RNA helicase [Lycopersicon esculentum] GI:5669638; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 591 Score = 46.4 bits (105), Expect = 1e-05 Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 5/89 (5%) Frame = +2 Query: 254 QGRDVIAQAQSGTGQTATFSISILQLIDTSIRECQ-----ALILAPTRELAQQIQKVVIA 418 +GRD+I A++G+G+T + + L + R Q LILAPTRELA QIQ+ Sbjct: 201 KGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRK 260 Query: 419 LGDHLNAKCHACIGGTNVREDIRQLEXGV 505 G + GG IR L GV Sbjct: 261 FGLRSGVRSTCIYGGAPKGPQIRDLRRGV 289 >At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase, putative (RH30) strong similarity to ethylene-responsive RNA helicase [Lycopersicon esculentum] GI:5669638; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 484 Score = 46.4 bits (105), Expect = 1e-05 Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 5/89 (5%) Frame = +2 Query: 254 QGRDVIAQAQSGTGQTATFSISILQLIDTSIRECQ-----ALILAPTRELAQQIQKVVIA 418 +GRD+I A++G+G+T + + L + R Q LILAPTRELA QIQ+ Sbjct: 201 KGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRK 260 Query: 419 LGDHLNAKCHACIGGTNVREDIRQLEXGV 505 G + GG IR L GV Sbjct: 261 FGLRSGVRSTCIYGGAPKGPQIRDLRRGV 289 >At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-consensus acceptor splice site AT at exon 2; similar to DEAD box helicase protein GB:NP_006764 from [Homo sapiens], contains Pfam profile: PF00270 DEAD/DEAH box helicase Length = 568 Score = 46.4 bits (105), Expect = 1e-05 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 4/89 (4%) Frame = +2 Query: 248 LHQGRDVIAQAQSGTGQTATFSISILQLIDT---SIRE-CQALILAPTRELAQQIQKVVI 415 L +G+DV+ A++G+G+T F I ++L+ S R +++ PTRELA Q + V Sbjct: 123 LLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVAE 182 Query: 416 ALGDHLNAKCHACIGGTNVREDIRQLEXG 502 L H + IGG N R + +++ G Sbjct: 183 ELLKHHSQTVSMVIGGNNRRSEAQRIASG 211 >At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) similar to ethylene-responsive RNA helicase GI:5669638 from [Lycopersicon esculentum]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 501 Score = 46.4 bits (105), Expect = 1e-05 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 5/89 (5%) Frame = +2 Query: 254 QGRDVIAQAQSGTGQTATFSISILQLIDTSIRECQA-----LILAPTRELAQQIQKVVIA 418 +GRD+I A++G+G+T ++ + + ++ L+LAPTRELA QIQ+ Sbjct: 135 KGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASK 194 Query: 419 LGDHLNAKCHACIGGTNVREDIRQLEXGV 505 G K GG +R L+ GV Sbjct: 195 FGSSSKIKTTCIYGGVPKGPQVRDLQKGV 223 >At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein contains Pfam profile: PF00270 DEAD/DEAH box helicase Length = 505 Score = 46.0 bits (104), Expect = 2e-05 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 8/91 (8%) Frame = +2 Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDT--------SIRECQALILAPTRELAQQIQKVV 412 G+ ++A A +G+G+TA+F + I+ T R A++LAPTREL Q++ Sbjct: 147 GKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQA 206 Query: 413 IALGDHLNAKCHACIGGTNVREDIRQLEXGV 505 LG L K +GG + + +++ GV Sbjct: 207 KMLGKGLPFKTALVVGGDPMSGQLYRIQQGV 237 >At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein contains Pfam profile: PF00270 DEAD/DEAH box helicase Length = 368 Score = 46.0 bits (104), Expect = 2e-05 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 8/91 (8%) Frame = +2 Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDT--------SIRECQALILAPTRELAQQIQKVV 412 G+ ++A A +G+G+TA+F + I+ T R A++LAPTREL Q++ Sbjct: 10 GKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQA 69 Query: 413 IALGDHLNAKCHACIGGTNVREDIRQLEXGV 505 LG L K +GG + + +++ GV Sbjct: 70 KMLGKGLPFKTALVVGGDPMSGQLYRIQQGV 100 >At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar to ATP-dependent RNA helicase GB:6321111 from (S. cerevisiae) Length = 558 Score = 43.6 bits (98), Expect = 9e-05 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 7/86 (8%) Frame = +2 Query: 260 RDVIAQAQSGTGQTATFSISILQLIDTS------IRECQALILAPTRELAQQIQKVVIAL 421 +DV+ A +G+G+T F + +++I S + +I++PTREL+ QI KV Sbjct: 54 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPF 113 Query: 422 GDHL-NAKCHACIGGTNVREDIRQLE 496 L N +GG V D+ LE Sbjct: 114 VSTLPNVNSVLLVGGREVEADMNTLE 139 >At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to RNA helicase [Arabidopsis thaliana] GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 563 Score = 43.2 bits (97), Expect = 1e-04 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 9/90 (10%) Frame = +2 Query: 254 QGRDVIAQAQSGTGQTATFSISILQLI--------DTSIRECQALILAPTRELA-QQIQK 406 QG+D++A+A++GTG+T F + ++ + D L++ PTRELA Q + Sbjct: 116 QGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAE 175 Query: 407 VVIALGDHLNAKCHACIGGTNVREDIRQLE 496 I L H + IGGT + + R+L+ Sbjct: 176 ANILLKYHPSIGVQVVIGGTKLPTEQRRLQ 205 >At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar to RNA helicase [Rattus norvegicus] GI:897915; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 760 Score = 42.7 bits (96), Expect = 2e-04 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 5/87 (5%) Frame = +2 Query: 257 GRDVIAQAQSGTGQTATFSI-SILQLIDTSIRECQ----ALILAPTRELAQQIQKVVIAL 421 GRDVI A++G+G+TA F + I+ ++D + +I APTRELA QI Sbjct: 265 GRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKF 324 Query: 422 GDHLNAKCHACIGGTNVREDIRQLEXG 502 + A GG + E ++L+ G Sbjct: 325 SKAYGLRVSAVYGGMSKHEQFKELKAG 351 Score = 31.1 bits (67), Expect = 0.50 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = +3 Query: 129 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242 D + V+TF+D +++ I +EKP+AIQ +A+ Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQAL 259 >At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13) similar to RNA helicase GB:CAA09204 from [Arabidopsis thaliana]; identical to cDNA DEAD box RNA helicase, RH13 GI:3776002 Length = 832 Score = 42.3 bits (95), Expect = 2e-04 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 20/106 (18%) Frame = +2 Query: 239 NNALHQGRDVIAQAQSGTGQTATFSISILQ-LIDTSIR----------ECQ--------- 358 N A +QG+DVI A++G+G+T F + ILQ L+D + E Q Sbjct: 222 NVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLR 281 Query: 359 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 496 ALI+ PTRELA Q+ + + +L+ K +GG + R+L+ Sbjct: 282 ALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLK 327 >At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar to p68 RNA helicase [Schizosaccharomyces pombe] GI:173419 Length = 537 Score = 42.3 bits (95), Expect = 2e-04 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 9/95 (9%) Frame = +2 Query: 248 LHQGRDVIAQAQSGTGQTATFSI-SILQLIDTSIR--------ECQALILAPTRELAQQI 400 L GRD+I A++G+G+T F I +I+ ++ + + L+L+PTRELA QI Sbjct: 148 LLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQI 207 Query: 401 QKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGV 505 V+ G+ K GG++ I + GV Sbjct: 208 SDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGV 242 >At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong similarity to RNA helicase RH26 [Arabidopsis thaliana] GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain; identical to cDNA DEAD box RNA helicase, RH26 GI:3776024 Length = 850 Score = 41.9 bits (94), Expect = 3e-04 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 9/90 (10%) Frame = +2 Query: 254 QGRDVIAQAQSGTGQTATFSISILQLI--------DTSIRECQALILAPTRELAQQ-IQK 406 QG+DV+A+A++GTG+T F + ++ + D+ L++ PTRELA Q + Sbjct: 418 QGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAE 477 Query: 407 VVIALGDHLNAKCHACIGGTNVREDIRQLE 496 L H + IGGT + + R+++ Sbjct: 478 ANTLLKYHPSIGVQVVIGGTKLPTEQRRMQ 507 >At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) Length = 593 Score = 41.9 bits (94), Expect = 3e-04 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 9/102 (8%) Frame = +2 Query: 218 FCNP--ATRNNALHQGRDVIAQAQSGTGQTATFSISILQLIDTSI------RECQALILA 373 FC P A L +DV A +G+G+T F + +++++ S + +I++ Sbjct: 38 FCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIIS 97 Query: 374 PTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLE 496 PTREL+ QI V L N +GG V+ D++ +E Sbjct: 98 PTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIE 139 >At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong similarity to RNA helicase RH25 [Arabidopsis thaliana] GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain; identical to cDNA DEAD box RNA helicase, RH31 GI:3776030 Length = 522 Score = 41.1 bits (92), Expect = 5e-04 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 9/90 (10%) Frame = +2 Query: 254 QGRDVIAQAQSGTGQTATFSISILQLI--------DTSIRECQALILAPTRELAQQ-IQK 406 +G+DV+A+A++GTG+T F + ++++ D AL++ PTRELA Q + Sbjct: 90 KGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATE 149 Query: 407 VVIALGDHLNAKCHACIGGTNVREDIRQLE 496 L H + IGGT + + ++++ Sbjct: 150 ANTLLKYHPSIGVQVVIGGTRLGLEQKRMQ 179 >At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA helicase -Mus musculus,PIR2:I84741 Length = 621 Score = 41.1 bits (92), Expect = 5e-04 Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 9/86 (10%) Frame = +2 Query: 245 ALHQGRDVIAQAQSGTGQTATFSISILQLI---------DTSIRECQALILAPTRELAQQ 397 A+ + + V+ + +G+G+T + + I+QL+ T R + ++L PTREL++Q Sbjct: 145 AVMERKSVVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQ 204 Query: 398 IQKVVIALGDHLNAKCHACIGGTNVR 475 + +V ++ H + GG+ +R Sbjct: 205 VYRVAKSISHHARFRSILVSGGSRIR 230 >At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to RNA helicase RH25 [Arabidopsis thaliana] GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 845 Score = 41.1 bits (92), Expect = 5e-04 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 10/99 (10%) Frame = +2 Query: 230 ATRNNALHQGRDVIAQAQSGTGQTATFSI----SILQLIDT-----SIRECQALILAPTR 382 AT + L G+D + +A++GTG++ F + ++L+ +++ + LIL PTR Sbjct: 404 ATLSECL-DGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTR 462 Query: 383 ELAQQIQKVVIA-LGDHLNAKCHACIGGTNVREDIRQLE 496 ELA QI A L +H IGGT R D ++LE Sbjct: 463 ELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLE 501 >At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 798 Score = 40.3 bits (90), Expect = 8e-04 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 12/101 (11%) Frame = +2 Query: 230 ATRNNALHQGRDVIAQAQSGTGQTATFSISILQLIDTSIRECQ---------ALILAPTR 382 AT + L G+D + +A++GTG++ F + ++ + ++ + ALIL PTR Sbjct: 357 ATLSECL-DGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTR 415 Query: 383 ELAQQIQ---KVVIALGDHLNAKCHACIGGTNVREDIRQLE 496 ELA QI K ++ D + + IGGT + D ++LE Sbjct: 416 ELASQIAAEGKALLKFHDGIGVQ--TLIGGTRFKLDQQRLE 454 >At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16) identical to cDNA DEAD box RNA helicase, RH16 GI:3776006 Length = 626 Score = 39.5 bits (88), Expect = 0.001 Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 6/62 (9%) Frame = +2 Query: 254 QGRDVIAQAQSGTGQTATFSISILQLI---DTSIRE---CQALILAPTRELAQQIQKVVI 415 +G+DV+A+A++G+G+T + + +LQ + D+ ++ A IL P+REL QQ+ V Sbjct: 82 EGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVS 141 Query: 416 AL 421 +L Sbjct: 142 SL 143 Score = 32.7 bits (71), Expect = 0.16 Identities = 13/36 (36%), Positives = 23/36 (63%) Frame = +3 Query: 135 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242 ++ ++F+++ L L+R + G EKP+ IQQ AI Sbjct: 42 EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAI 77 >At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains Pfam profile: PF00270 DEAD/DEAH box helicase Length = 465 Score = 39.5 bits (88), Expect = 0.001 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 6/80 (7%) Frame = +2 Query: 260 RDVIAQAQSGTGQTATFSISILQLIDTSI------RECQALILAPTRELAQQIQKVVIAL 421 +DV+ A +G+G+T F + +++I S + +I++PTREL+ QI KV A+ Sbjct: 55 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAV 114 Query: 422 GDHLNAKCHACIGGTNVRED 481 AKC N E+ Sbjct: 115 RLDF-AKCREVEADMNTLEE 133 >At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains Pfam profiles PF00270:DEAD/DEAH box helicase and PF00271: Helicase conserved C-terminal domain; identical to cDNA RH27 helicase, partial GI:4033334 Length = 633 Score = 38.7 bits (86), Expect = 0.003 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 4/91 (4%) Frame = +2 Query: 248 LHQGRDVIAQAQSGTGQTATFSISILQLI----DTSIRECQALILAPTRELAQQIQKVVI 415 L G DV+ A++G+G+T F I ++L+ T L++ PTRELA Q V Sbjct: 188 LMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAK 247 Query: 416 ALGDHLNAKCHACIGGTNVREDIRQLEXGVH 508 L + + IGG + + L GV+ Sbjct: 248 ELLKYHSQTVGKVIGGEKRKTEAEILAKGVN 278 >At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative Length = 739 Score = 38.7 bits (86), Expect = 0.003 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Frame = +2 Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQ----ALILAPTRELAQQIQKVVIALG 424 GRD++ A++G+G+T F I IL+ + + +I++PTRELA Q V+ +G Sbjct: 108 GRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVG 167 Query: 425 DHLNAKCHACIGG 463 IGG Sbjct: 168 KFHKFSAGLLIGG 180 >At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA helicase DBP2 - Saccharomyces cerevisiae, PID:g5272 Length = 542 Score = 38.3 bits (85), Expect = 0.003 Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 14/98 (14%) Frame = +2 Query: 257 GRDVIAQAQSGTGQTATFSISILQL-----IDTSIRECQ---ALILAPTRELAQQ----I 400 GRD+I A +G+G+T F + ++ L I I + AL++ P+RELA+Q + Sbjct: 134 GRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVV 193 Query: 401 QKVVIALGD--HLNAKCHACIGGTNVREDIRQLEXGVH 508 ++ V +L + + + CIGG ++R + ++ GVH Sbjct: 194 EQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVH 231 >At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative Length = 591 Score = 37.5 bits (83), Expect = 0.006 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 14/98 (14%) Frame = +2 Query: 257 GRDVIAQAQSGTGQTATFSISILQLI--DTSIRECQA------LILAPTRELAQQIQKVV 412 GRD+I A +G+G+T F + ++ + + + A LI+ P+RELA+Q +VV Sbjct: 183 GRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVV 242 Query: 413 ------IALGDHLNAKCHACIGGTNVREDIRQLEXGVH 508 + + + CIGG ++R + ++ GVH Sbjct: 243 EQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVH 280 >At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly identical to RNA helicase [Arabidopsis thaliana] GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 671 Score = 37.1 bits (82), Expect = 0.008 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 10/93 (10%) Frame = +2 Query: 257 GRDVIAQAQSGTGQTATFSISILQ-LIDTSI---------RECQALILAPTRELAQQIQK 406 G D++ +A++G G+T F + IL+ L++ R L+L PTRELA+Q+ Sbjct: 133 GADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAA 192 Query: 407 VVIALGDHLNAKCHACIGGTNVREDIRQLEXGV 505 A G L GG + +L+ GV Sbjct: 193 DFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGV 225 >At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein / pentatricopeptide (PPR) repeat-containing protein contains Pfam profiles: PF00271 helicase conserved C-terminal domain, PF01535 PPR repeat, PF00270: DEAD/DEAH box helicase Length = 1145 Score = 35.1 bits (77), Expect = 0.031 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 14/89 (15%) Frame = +2 Query: 245 ALHQGRDVIAQAQSGTGQTATFSISILQLI-------------DTSIRECQALILAPTRE 385 A+ +G D + Q+ +G+G+T + + IL I + E QA+I+AP+RE Sbjct: 143 AIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRE 202 Query: 386 LAQQI-QKVVIALGDHLNAKCHACIGGTN 469 L QI ++V LG +GG N Sbjct: 203 LGMQIVREVEKLLGPVHRRMVQQLVGGAN 231 >At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar to RNA helicase involved in rRNA processing GB:6321267 from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH box domain Length = 541 Score = 33.1 bits (72), Expect = 0.12 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Frame = +2 Query: 248 LHQGRDVIAQAQSGTGQTATFSISIL-QLIDTSIRECQALILAPTRELAQQ 397 L GR+ A A +G+G+T F +L +L S +A+IL+P RELA Q Sbjct: 175 LLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQ 225 >At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17) identical to GB:CAA09207, contains a DEAD/DEAH box family ATP-dependent helicas signature; identical to cDNA DEAD box RNA helicase, RH17 GI:3776008 Length = 609 Score = 31.9 bits (69), Expect = 0.29 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%) Frame = +2 Query: 257 GRDVIAQAQSGTGQTATFSISILQLIDTSIRECQ------ALILAPTRELAQQIQKVV 412 GRDV+ A +GTG+T + ++ + + AL++ PTREL Q+ + + Sbjct: 67 GRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETL 124 >At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains Pfam profile: PF00270 DEAD/DEAH box helicase Length = 781 Score = 30.3 bits (65), Expect = 0.88 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 10/93 (10%) Frame = +2 Query: 257 GRDVIAQAQSGTGQTATFSISILQLI--------DTSIREC-QALILAPTRELAQQIQKV 409 G+ I QSG+G+T + + ++Q + S C + ++L PT ELA Q+ Sbjct: 411 GKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLAN 470 Query: 410 VIALG-DHLNAKCHACIGGTNVREDIRQLEXGV 505 ++ + + GG R + LE GV Sbjct: 471 CRSISKSGVPFRSMVVTGGFRQRTQLENLEQGV 503 >At3g10020.1 68416.m01202 expressed protein Length = 149 Score = 29.5 bits (63), Expect = 1.5 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Frame = +3 Query: 63 GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQR 236 GP + D PP MD G + D +QV ++ DD+ + EL++G E P+ + + Sbjct: 83 GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAV--ELVKGEVEVAKEAPAGVARV 140 Query: 237 AIMP 248 + P Sbjct: 141 EVDP 144 >At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) and Pfam profile: PF00023 ankyrin repeat Length = 376 Score = 29.1 bits (62), Expect = 2.0 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +2 Query: 362 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 466 LILA T + + K ++ LG ++NA C GGT Sbjct: 46 LILACTNDDLYDVAKTLLELGSNVNAYRSGCNGGT 80 >At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing protein contains Pfam profile PF00515 TPR Domain Length = 691 Score = 29.1 bits (62), Expect = 2.0 Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 2/53 (3%) Frame = +2 Query: 311 SISILQLIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 463 +++ L+ + +++EC +A+ + P+ A Q++ + + LG+ NA+ H C G Sbjct: 263 ALTALRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSG 315 >At1g76010.1 68414.m08825 expressed protein Length = 350 Score = 27.9 bits (59), Expect = 4.7 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%) Frame = +3 Query: 18 SSERRSEDWPEDSK---NGPSKDQGSYDGPPGMDPG 116 S R D P + +GPS+ +G YDGP G G Sbjct: 282 SQGRGGYDGPSQGRGGYDGPSQGRGGYDGPQGRGRG 317 >At5g53760.1 68418.m06680 seven transmembrane MLO family protein / MLO-like protein 11 (MLO11) identical to membrane protein Mlo11 [Arabidopsis thaliana] gi|14091592|gb|AAK53804; similar to MLO protein SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum vulgare][Barley] Length = 573 Score = 27.5 bits (58), Expect = 6.2 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = -2 Query: 380 LWEPGSKLDIHECLYRLVVESI*RK-*QFVQFLT 282 +WE ++LD H+CL + E I R+ FVQ+ T Sbjct: 192 IWEDVARLDRHDCLTAVAREKIFRRQTTFVQYHT 225 >At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing protein contains Pfam profile PF00515 TPR Domain Length = 682 Score = 27.5 bits (58), Expect = 6.2 Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 2/46 (4%) Frame = +2 Query: 332 IDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 463 ++ +++EC +A+ P+ A Q++ + + LG+ NA+ H C+ G Sbjct: 261 LEEAVKECLEAVRCDPSYARAHQRLASLYLRLGEAENARRHLCVSG 306 >At5g03500.1 68418.m00306 transcriptional co-activator-related low similarity to transcriptional co-activator CRSP33 [Homo sapiens] GI:4220890 Length = 443 Score = 27.1 bits (57), Expect = 8.2 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -3 Query: 496 LQLANIFTDIGATNASMAFSIQVITKSYHHLLNLL 392 L+LA++ D + A I I K+ HHLLN L Sbjct: 86 LELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120 >At5g03220.1 68418.m00270 transcriptional co-activator-related contains weak similarity to Cofactor required for Sp1 transcriptional activation subunit 9 (Transcriptional co-activator CRSP33) (RNA polymerase transcriptional regulation mediator subunit 7 homolog) (hMED7) (Activator-recruited cofactor 34 kDa component) (ARC34) (Swiss-Prot:O43513) [Homo sapiens] Length = 168 Score = 27.1 bits (57), Expect = 8.2 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -3 Query: 496 LQLANIFTDIGATNASMAFSIQVITKSYHHLLNLL 392 L+LA++ D + A I I K+ HHLLN L Sbjct: 86 LELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,092,279 Number of Sequences: 28952 Number of extensions: 282024 Number of successful extensions: 995 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 860 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 951 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1023490624 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -