Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0253
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    30   0.29 
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    27   2.7  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    27   3.6  
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo...    26   4.7  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    26   4.7  
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    26   6.3  

>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +1

Query: 301 RSDLFCHNRNLF--VETSESISFSVNDKEAYFSNATMYLIKKYISSY 435
           +S+++  NRNL   ++T E IS  V DKE YFS+    LI+  I  Y
Sbjct: 375 QSEIYSTNRNLLSVLQTVEQISKEV-DKE-YFSSTNHQLIRSEIGEY 419


>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 682 TWN-IREISRIKCNENAKYNLRTTYT 608
           +WN +R I +I CNEN KY    T T
Sbjct: 23  SWNCVRRIGKIACNEN-KYRYEMTST 47


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 438 LTYRQRSHRELIFKYRNNHHKILIR 512
           LT+RQ S  E    Y  NHH I I+
Sbjct: 43  LTFRQSSSDESTSSYSGNHHNINIQ 67


>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +1

Query: 295 TSRSDLFCHNRNLFVETSESISFSVNDKEAYFSNATMYLIKKYI 426
           T+RS +     +  +   + +SFSVN      + + +Y++ KY+
Sbjct: 191 TNRSRIIKETSSYLLSQEDQLSFSVNSNGFTNACSVLYMLDKYL 234


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +1

Query: 343 TSESISFSVNDKEAYFSNATMYLIKKYISSYFLLTGNGPI 462
           TS SIS   +   AY SNA    I  Y+SS     GN  I
Sbjct: 127 TSGSISLYDDYYPAYSSNAPNTAISNYVSSGLSYYGNSSI 166


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -2

Query: 355 YFHLFQQIDFYYGKKGLIYWWPKVYVKIKNYTYKTCCIHIMTWFYFV 215
           +FH    +   +G  G  YW PK++  + N T  +    I  W  F+
Sbjct: 383 HFHYVLSMGALFGLCGAYYWSPKMFGLMYNETLAS----IQFWILFI 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,661
Number of Sequences: 5004
Number of extensions: 51603
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)