Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0253
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81564-2|CAB04568.1|  189|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z81564-2|CAB04568.1|  189|Caenorhabditis elegans Hypothetical
           protein K05C4.2 protein.
          Length = 189

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 203 SFPLNKIKPRHYVYTARFISVIFNFNIDL 289
           SF  NK+K  HY Y A F+  IF   I L
Sbjct: 98  SFQRNKLKILHYAYYAEFVVGIFPCMIGL 126


>Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical protein
            T28B8.3a protein.
          Length = 1838

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +3

Query: 411  NKKIYFIILLTYRQRSHRELIFKYRNNHHKILIRCKKKKTILRML*KFFVLVLVTKM*SH 590
            N K Y I+    R     ++  K  + H K+L++ KKK   L     F  +VL  K  S 
Sbjct: 1349 NDKFYRILKYVIRNYPDTKIPLKLMSEHLKLLMKSKKKNEQLLAAEIFIGIVLGIKHRSF 1408

Query: 591  F 593
            F
Sbjct: 1409 F 1409


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,636,085
Number of Sequences: 27780
Number of extensions: 280680
Number of successful extensions: 587
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)