Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0253
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64110.2 68414.m07264 AAA-type ATPase family protein contains...    30   1.8  
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains...    30   1.8  
At1g29500.1 68414.m03609 auxin-responsive protein, putative simi...    28   5.5  
At5g01360.1 68418.m00049 expressed protein several hypothetical ...    27   9.5  

>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 829

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 257 ISVIFNFNIDLRPPVDQT 310
           +S +F +NID+RPP D+T
Sbjct: 324 LSAVFPYNIDIRPPEDET 341


>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 824

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 257 ISVIFNFNIDLRPPVDQT 310
           +S +F +NID+RPP D+T
Sbjct: 319 LSAVFPYNIDIRPPEDET 336


>At1g29500.1 68414.m03609 auxin-responsive protein, putative similar
           to auxin-induced protein 6B (SP:P33083) [Glycine max]
          Length = 135

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -1

Query: 518 FTTNQYFVMVISVFEN*FSMGPL-PVSKKYDEIYFFIKYIVALLK*ASLSFTEKLILSLV 342
           + +N  F  ++ + E  F +    P++  +D +  F++Y++ L+K      TEK +L  +
Sbjct: 58  YLSNSVFQEILEISEEEFGLPTGGPITLPFDSV--FLEYLIKLIKRRMDGDTEKALLMSI 115

Query: 341 STNR 330
           S+ R
Sbjct: 116 SSAR 119


>At5g01360.1 68418.m00049 expressed protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 434

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 363 KTNTFTCFNK*ISIMAKKV*STGGRRSMLKLKITLIK 253
           K N   CFN+   I  KK   TG  + M+K+  ++IK
Sbjct: 330 KPNGTKCFNETKPIKDKKFWGTGSNKQMMKVVSSVIK 366


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,087,352
Number of Sequences: 28952
Number of extensions: 230813
Number of successful extensions: 479
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)