Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0252
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    30   0.30 
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    29   0.70 
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    27   1.6  
SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|c...    26   5.0  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    25   8.7  

>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +2

Query: 170 WVLCNYGYHYVLLLTSPYQI*LKSTYKKNIKVFILCIYSFFSIHL 304
           W+L   G H    LT  +   L+ T+K NIKV+  C+ SF ++ L
Sbjct: 174 WLL--RGNHECAHLTDYFTFKLECTHKYNIKVYEACLQSFNALPL 216


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 170 WVLCNYGYHYVLLLTSPYQI*LKSTYKKNIKVFILCIY 283
           W+  + GY +  LL +  QI L + Y++  K  ILCIY
Sbjct: 163 WITFHSGYDFAYLLKAMTQIPLPAEYEEFYK--ILCIY 198


>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 333 HVHKVATLPNKWIEKNE*IHRIKTFIFFLY 244
           HV  V+ +P   IE  + IHR  TFI  LY
Sbjct: 351 HVFIVSDIPKLSIESKDLIHRFITFIDALY 380


>SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 206 LLTSPYQI*LKSTYKKNIKVFILCIYSFFSIHLFGRV 316
           LL SPY   L + + ++IK  I+C ++   I  F R+
Sbjct: 78  LLQSPYLAALANEFNRSIKEGIICNFTRSIIDPFSRI 114


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 371 YTLSSLLAFDAMNMCIKLQLCQINGSKKMNKYIE 270
           +TL +L+ F    +C K  L   N  KK+N  IE
Sbjct: 15  FTLKNLIFFAISTLCYKRALFNENCYKKVNFEIE 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,835
Number of Sequences: 5004
Number of extensions: 44781
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)