Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0250
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    27   2.3  
SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi...    26   3.1  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   5.4  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   7.1  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   7.1  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   9.4  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    25   9.4  
SPBC2D10.07c |||mitochondrial inner membrane peptidase complex c...    25   9.4  

>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -3

Query: 255 TRSPAPGCPSADVRSPGP-AARMEARIRYRSTVQ--SCAPA 142
           TR P P CPS D+    P    + + + Y+  V   +C P+
Sbjct: 781 TRHPVPHCPSVDLYINSPQCGTLHSGVEYKFNVSAYACQPS 821


>SPBC18E5.05c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 392 FSSRGLAELLRLHRAQASQEA-LRELTASLLEQLAEEKVIVTSSPTCE 532
           F+S     L+ +       +A +R L   LLE+L ++K+I      CE
Sbjct: 152 FTSTCTVSLIGMQHLSVEHDAKMRSLPNPLLEELQDDKIISLLGSNCE 199


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/42 (23%), Positives = 24/42 (57%)
 Frame = +2

Query: 11  HHAKFRTGIRETDASVQVLGKNVRRGNEKGSGLLERLRSRTA 136
           H+A  +  + ++  SV++ G  ++  +EKG   + ++R+  A
Sbjct: 607 HNAPKKKNLNDSLKSVELEGNGIKLSSEKGKNNVNKVRNDNA 648


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 138 CAVRDRSLSSRPEPFSFPLRTFFPSTCTDASVSRIPV 28
           CAV  RSL  R +  S   +  F   C + +V   PV
Sbjct: 568 CAVVQRSLERRNQSTSAACQQCFSQYCWNGTVDNTPV 604


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 249 SPAPGCPSADVRSPGPAARMEARIRYRST--VQSCAPA*CAVRDRSLSS 109
           SPA G P+    +P P A   A   Y ST    S  P+  ++R  SL++
Sbjct: 306 SPARGFPTTSAYNPAPPAYGMANPAYGSTGIRSSSIPSSGSIRSPSLTT 354


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 470 PSVHGEPPATLVPDVVAAARQVREKRKQRPEPPS 369
           PSVH  P A + P+V +A +  R      PE PS
Sbjct: 527 PSVHQPPAAPVAPEVPSAPQ--RPAAPVVPEAPS 558


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 220 IC*RTTWRW 246
           IC RTTWRW
Sbjct: 243 ICQRTTWRW 251


>SPBC2D10.07c |||mitochondrial inner membrane peptidase complex
          catalytic subunit|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 157

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 68 QVLVPTHQFHEYLFEI 21
          Q+    HQ HEYLF++
Sbjct: 13 QIAAFVHQIHEYLFQV 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,831,352
Number of Sequences: 5004
Number of extensions: 32956
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)