Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0250
         (533 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)                    62   2e-10
SB_42832| Best HMM Match : ShTK (HMM E-Value=4.6e-07)                  31   0.45 
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)                 30   1.4  
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_17019| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.6  
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)               27   9.6  

>SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)
          Length = 457

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 28/59 (47%), Positives = 42/59 (71%)
 Frame = +3

Query: 3   DMDTMRNFEQVFVKLMRRYKYLEKMFEEEMKKVLVYLKGFDPEQRIKLARMTALWIGNG 179
           D +T+R   Q+  KL+ RY+YL+K +E+EM K+L++LKGF  E+R KLA  T + + NG
Sbjct: 86  DNETLRKHVQMHNKLICRYRYLQKSYEDEMNKILLFLKGFTDEEREKLAFTTGVVLANG 144


>SB_42832| Best HMM Match : ShTK (HMM E-Value=4.6e-07)
          Length = 500

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = -3

Query: 189 EARIRYRSTVQSCAPA*CAVRDRSLSSRPEPFSFPLRTFFPSTCT---DASVSRIPVRNF 19
           E   R  + + S  P  C  + RS+S  P+P+ +P+ T +P   T     +VS+  VR +
Sbjct: 156 EGYCRTDAEINSRCPYSCR-KYRSVSPAPQPYPYPIGTLYPYQPTPVPGVTVSQPKVRGW 214

Query: 18  AW 13
            W
Sbjct: 215 QW 216


>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
          Length = 1463

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 126 PEQRIKLARMTALWIGNGCVPPSVLLVLVN 215
           PE++ ++ ++  LW  NG  PP V+  L+N
Sbjct: 92  PEEQGRIVKVLNLWQKNGIFPPEVIQPLIN 121


>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2851

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 473 TPSVHGEPPATLVPDVVAAARQVREKRKQRPEPPS 369
           T +V   PP++    V A A+Q    + QRP PPS
Sbjct: 101 TTTVPAPPPSSTTAPVNAPAQQQPLLQPQRPTPPS 135


>SB_17019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/60 (23%), Positives = 27/60 (45%)
 Frame = +2

Query: 77  VRRGNEKGSGLLERLRSRTAHQAGAHDCTVDR*RMRASIRAAGPGERTSAEGQPGAGLRV 256
           +RR +E+     ER+  +  H  G      ++  +   +RA  P    ++  +P AG R+
Sbjct: 1   MRRNSERAESRAERIVQKRGHSGGVQSIRREKKILEPEVRARPPAVLRNSTAEP-AGQRL 59


>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1221

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 476  GTPSVHGEPPATLVPDVVAAARQVREKRKQRPEPPS 369
            G  S   + P T+    V+ AR   +KRK  P PPS
Sbjct: 1000 GEASTSSKRPLTIDIPTVSKARPAPKKRKILPPPPS 1035


>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
          Length = 3445

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
 Frame = -3

Query: 306  VTSEVTPRSCLMIANTSTRSPAPGCPSADVRSPGPAARMEARIRYRST---VQSCAPA*C 136
            V  E+T      +A  +T +P     S    +P P A  E  +   +T     + A    
Sbjct: 958  VAPEITDAPAATMAPQTTAAPETTMASETTMAPEPTAAPETTVAPETTDAPATTAARETT 1017

Query: 135  AVRDRSLSSR----PEPFSFPLRTFFPSTCTDASVSRI 34
            A  + +++S     PEP + P  T  P T TDA  + +
Sbjct: 1018 AAPETTMASETTMAPEPTAAPETTVAPET-TDAPATTL 1054


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,782,032
Number of Sequences: 59808
Number of extensions: 282193
Number of successful extensions: 979
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)