Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0250
         (533 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    26   0.28 
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    23   2.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.9  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 135 RIKLARMTALWIGNGCVPPSVLLVLVNEH 221
           R  +  ++ +W+G  C+    LL++ NEH
Sbjct: 156 RRMIVYVSLVWLGAACISLPPLLIMGNEH 184


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 141 KLARMTALWIGNGC 182
           KL RMT  W+G  C
Sbjct: 1   KLWRMTGTWVGGFC 14


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = -2

Query: 400 RRESSAQSLLAAAIKREELQQSAFKLSLVERRDERGDAALLLDDREHFH 254
           ++E   QS + A +KR + Q   +K+++   ++  G    +    +H H
Sbjct: 497 QQEEQTQSRVRAHLKRLDHQPYQYKIAVHSEQNVPGAVVRVFLGPKHDH 545


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,697
Number of Sequences: 438
Number of extensions: 2615
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)