Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0249
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    30   0.37 
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    30   0.37 
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    28   1.1  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    26   4.6  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    26   6.1  
SPAC1610.01 ||SPAC17A5.17|conserved fungal protein|Schizosacchar...    26   6.1  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    26   6.1  
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    25   8.0  

>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 3   YNHYARYTAREAMDHPYF 56
           Y+H  R T +EAM HPYF
Sbjct: 311 YDHQERLTCQEAMAHPYF 328


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 234 DVFFTMSLLESCTSIYKYIVLIRVLMTLVITLQN 133
           D++F   L++ CTSI K +V      TL   L+N
Sbjct: 179 DLYFLSELVKDCTSIQKLVVFENAFETLFSLLEN 212


>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 6   NHYARYTAREAMDHPYFY 59
           N   R +A+EA++HPYFY
Sbjct: 343 NPAKRISAKEALEHPYFY 360


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 6   NHYARYTAREAMDHPYFYPIVKEQGRMATSNS 101
           N   R +  EA+ HP+FY +   + R   S+S
Sbjct: 417 NPEKRISESEALQHPWFYTVSTHEHRTPPSSS 448


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 48  PYFYPIVKEQGRMATSNSPTPNALQ 122
           PY++ I  E  R A++ SPTPN+++
Sbjct: 181 PYYHEI--EPPRTASNTSPTPNSIK 203


>SPAC1610.01 ||SPAC17A5.17|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = -2

Query: 162 LMTLVITLQNLLVLAVH*E*VSWKLPFDPAPLRLDKNMDGP*LHEQ 25
           L+TL++T Q+ ++     +   WK+P++   L   ++ D P ++ Q
Sbjct: 52  LITLLVTSQSFILFDEE-QNSGWKIPYETITLHAKQSKDKPYVYVQ 96


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 217 VSSGILYKYI*IHSINKSVNDSCD-YSPEFTG 125
           V+SGI++K + +  IN ++ D C   +P F+G
Sbjct: 100 VTSGIIFKVLHLLRINVNIRDVCVLLAPAFSG 131


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 3   YNHYARYTAREAMDHPYFYPIVKEQGRMATSNSP 104
           Y    R TA EAM HP+F  +     ++  S +P
Sbjct: 299 YTPTDRLTAAEAMCHPFFDELRDPNTKLHNSRNP 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,438
Number of Sequences: 5004
Number of extensions: 62045
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)