Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0249
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55368| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.033)           30   2.1  
SB_24662| Best HMM Match : DUF229 (HMM E-Value=1.2e-26)                30   2.1  
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)                    29   4.9  

>SB_55368| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.033)
          Length = 321

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 384 LFVVKVFYLSYKLLLKQFCGSV--HVFELSSILWWVGFN 494
           L+ V  FYL +  L    C S+   VF+  SI WW+ FN
Sbjct: 172 LWWVLCFYLQWPFLFLTLCFSLMPSVFQKWSISWWMYFN 210


>SB_24662| Best HMM Match : DUF229 (HMM E-Value=1.2e-26)
          Length = 972

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 175 INKSVNDSCDYSPEFTGPCSALGVGELEVAIRPCSFTIG*KYGWSIAS 32
           I +SVN     +PE T  CS +  G++++A +   +    K+ WS A+
Sbjct: 650 IIESVNQILSKNPEMTEKCSKVEFGKIKLATKLTPYEAVLKFKWSKAA 697


>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +2

Query: 65  RKGAGSNGNFQLTYS*CTARTSKFWRVITRVINTLINTMYLYILVQDSRRDI 220
           R G GS G  +  Y   +  T  FW++I+  I   + T  +YI  +D+R  I
Sbjct: 129 RGGGGSYGGGRRDYGGASISTKLFWKIISACIYYAVFTR-VYICDRDTRLKI 179


>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3255

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 220  NVSSGILYKYI*IHSINKSVNDSCDYSPEFTGP 122
            N   G L +++   ++N S+ D  D  P FTGP
Sbjct: 980  NADDGSLVRFMAATTVNISIADENDNQPTFTGP 1012


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,160,676
Number of Sequences: 59808
Number of extensions: 412617
Number of successful extensions: 813
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)