Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0249
(709 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
J05274-1|AAA27984.1| 360|Caenorhabditis elegans protein ( C.ele... 36 0.038
AF067211-13|AAC16993.1| 360|Caenorhabditis elegans Protein kina... 36 0.038
Z99773-4|CAB16925.1| 342|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z99773-1|CAB16923.2| 406|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z50110-5|CAA90447.1| 342|Caenorhabditis elegans Hypothetical pr... 29 3.3
U50308-5|AAG24033.2| 284|Caenorhabditis elegans Seven tm recept... 29 3.3
AF083878-1|AAD48898.1| 342|Caenorhabditis elegans cyclin-depend... 29 3.3
AC006615-6|AAK68228.1| 531|Caenorhabditis elegans Hypothetical ... 29 3.3
AF000191-1|AAB52884.1| 533|Caenorhabditis elegans Hypothetical ... 29 4.3
AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trn... 27 9.9
>J05274-1|AAA27984.1| 360|Caenorhabditis elegans protein (
C.elegans casein kinaseII-alpha gene, complete cds. ).
Length = 360
Score = 35.5 bits (78), Expect = 0.038
Identities = 22/52 (42%), Positives = 27/52 (51%)
Frame = +3
Query: 3 YNHYARYTAREAMDHPYFYPIVKEQGRMATSNSPTPNALQGPVNSGE*SQES 158
Y+H R TA+EAM H YF P+V+ R +N QG NS SQ S
Sbjct: 306 YDHAERLTAQEAMGHEYFRPVVEAHAR---ANGTEQADGQGASNSAS-SQSS 353
>AF067211-13|AAC16993.1| 360|Caenorhabditis elegans Protein kinase
protein 3 protein.
Length = 360
Score = 35.5 bits (78), Expect = 0.038
Identities = 22/52 (42%), Positives = 27/52 (51%)
Frame = +3
Query: 3 YNHYARYTAREAMDHPYFYPIVKEQGRMATSNSPTPNALQGPVNSGE*SQES 158
Y+H R TA+EAM H YF P+V+ R +N QG NS SQ S
Sbjct: 306 YDHAERLTAQEAMGHEYFRPVVEAHAR---ANGTEQADGQGASNSAS-SQSS 353
>Z99773-4|CAB16925.1| 342|Caenorhabditis elegans Hypothetical
protein F18H3.5a protein.
Length = 342
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 3 YNHYARYTAREAMDHPYFYPIVKEQGRM 86
Y+H R +AR A+ HP+ P V + R+
Sbjct: 307 YDHSKRLSARGALSHPFLKPAVATKSRV 334
>Z99773-1|CAB16923.2| 406|Caenorhabditis elegans Hypothetical
protein F18H3.5b protein.
Length = 406
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 3 YNHYARYTAREAMDHPYFYPIVKEQGRM 86
Y+H R +AR A+ HP+ P V + R+
Sbjct: 371 YDHSKRLSARGALSHPFLKPAVATKSRV 398
>Z50110-5|CAA90447.1| 342|Caenorhabditis elegans Hypothetical
protein F18H3.5a protein.
Length = 342
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 3 YNHYARYTAREAMDHPYFYPIVKEQGRM 86
Y+H R +AR A+ HP+ P V + R+
Sbjct: 307 YDHSKRLSARGALSHPFLKPAVATKSRV 334
>U50308-5|AAG24033.2| 284|Caenorhabditis elegans Seven tm receptor
protein 94 protein.
Length = 284
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +2
Query: 77 GSNGNFQLTYS*CTARTSKFWRVITRVINTLINTMYLYILVQDSRRDIVKKTSTRDR 247
GS G Q+ + C A T+ + IT ++ + +YI +Q + +KT R
Sbjct: 134 GSQGEIQIQWKSCLAMTNVYCIAITTLVTIMSLGYSIYIKMQSVNDMVAEKTRALQR 190
>AF083878-1|AAD48898.1| 342|Caenorhabditis elegans cyclin-dependent
kinase CDK-4 protein.
Length = 342
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 3 YNHYARYTAREAMDHPYFYPIVKEQGRM 86
Y+H R +AR A+ HP+ P V + R+
Sbjct: 307 YDHSKRLSARGALSHPFLKPAVATKSRV 334
>AC006615-6|AAK68228.1| 531|Caenorhabditis elegans Hypothetical
protein C36B7.2 protein.
Length = 531
Score = 29.1 bits (62), Expect = 3.3
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +3
Query: 15 ARYTAREAMDHPYFYPI 65
+R TA++A+DHP+FY +
Sbjct: 491 SRITAKQALDHPFFYSL 507
>AF000191-1|AAB52884.1| 533|Caenorhabditis elegans Hypothetical
protein T23C6.3 protein.
Length = 533
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 12 YARYTAREAMDH--PYFYPIVKEQGRMATSNSPTPNALQGP 128
Y Y +E M+ YF P+ + G ++ +P PN ++ P
Sbjct: 276 YPEYADKEKMERIVEYFAPVSRTPGHLSVVWNPMPNVVKSP 316
>AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform a protein.
Length = 909
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +1
Query: 181 VFIYTCTRFQKR---HCKKNINKRPLLFKYTEKKRDMP 285
+F + C++ Q R HC + N RP+ K +K D P
Sbjct: 138 LFAWNCSKLQLRSHHHCIMDPNLRPVAVKRVQKHWDQP 175
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,305,076
Number of Sequences: 27780
Number of extensions: 339800
Number of successful extensions: 704
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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