Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0249
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23070.1 68415.m02750 casein kinase II alpha chain, putative ...    38   0.005
At2g23080.1 68415.m02752 casein kinase II alpha chain, putative ...    38   0.009
At3g50000.1 68416.m05467 casein kinase II alpha chain 2 identica...    34   0.080
At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase f...    24   2.0  
At3g54180.1 68416.m05989 cell division control protein 2 homolog...    29   2.3  
At1g21270.1 68414.m02658 wall-associated kinase 2 (WAK2) identic...    29   2.3  
At5g67380.1 68418.m08496 casein kinase II alpha chain 1 identica...    29   3.0  
At4g10490.1 68417.m01721 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   9.2  

>At2g23070.1 68415.m02750 casein kinase II alpha chain, putative
           similar to casein kinase II, alpha chain (CK II) [Zea
           mays] SWISS-PROT:P28523; contains protein kinase domain,
           Pfam:PF00069
          Length = 432

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = +3

Query: 3   YNHYARYTAREAMDHPYFYPI 65
           Y+H  R TA+EAM HPYFYPI
Sbjct: 400 YDHQERPTAKEAMAHPYFYPI 420


>At2g23080.1 68415.m02752 casein kinase II alpha chain, putative
           identical to probable casein kinase II, alpha chain
           [Arabidopsis thaliana] SWISS-PROT:O64817; similar to
           casein kinase II, alpha chain 1 [Arabidopsis thaliana]
           SWISS-PROT:Q08467
          Length = 333

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 3   YNHYARYTAREAMDHPYFYPI-VKEQGRMAT 92
           Y+H  R TAREAMDHPYF  +   E  R+ T
Sbjct: 302 YDHQDRLTAREAMDHPYFAQVKAAESSRLRT 332


>At3g50000.1 68416.m05467 casein kinase II alpha chain 2 identical
           to casein kinase II, alpha chain 2 (CK II) [Arabidopsis
           thaliana] SWISS-PROT:Q08466
          Length = 403

 Score = 34.3 bits (75), Expect = 0.080
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 3   YNHYARYTAREAMDHPYFYPI-VKEQGRMAT 92
           Y+H  R TA+EAM HPYF  +   E  RM T
Sbjct: 372 YDHQDRLTAKEAMAHPYFAQVRAAESSRMRT 402


>At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase
           family protein similar to pVHL-interacting
           deubiquitinating enzyme 1 type II [Homo sapiens]
           GI:18698435; contains Pfam profile PF00443: Ubiquitin
           carboxyl-terminal hydrolase
          Length = 974

 Score = 24.2 bits (50), Expect(2) = 2.0
 Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
 Frame = -1

Query: 331 YLIGITSICIVSCTE*AYLSFSLCI*KAAVSC*CFFYNVSSGILYKY--I*IHSINKS-- 164
           Y I +T+ C++ C    +++   C+ K ++     F   S   +Y++    ++ ++K+  
Sbjct: 641 YFIVLTAFCVLICEHLEHITLLSCLVKFSLILQFLFMKASVLSIYRFSRAQVNELDKNRQ 700

Query: 163 ---VNDSCDYSPEFTGP 122
                D  DY P    P
Sbjct: 701 WSRALDGSDYLPGMVSP 717



 Score = 23.8 bits (49), Expect(2) = 2.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 379 VFTNYLNTKLYCLSKTYLIGITSI 308
           V+ N L  K+YCL  +Y I   S+
Sbjct: 600 VYINLLTEKVYCLPDSYEINDPSL 623


>At3g54180.1 68416.m05989 cell division control protein 2 homolog B
           (CDC2B) identical to cell division control protein 2
           homolog B [Arabidopsis thaliana] SWISS-PROT:P25859
          Length = 309

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 3   YNHYARYTAREAMDHPYFYPIVKEQ 77
           YN   R +A+ A+DHPYF  + K Q
Sbjct: 284 YNPAERISAKTALDHPYFDSLDKSQ 308


>At1g21270.1 68414.m02658 wall-associated kinase 2 (WAK2) identical
           to wall-associated kinase 2 [Arabidopsis thaliana]
           GI:4826399; induced by salicylic acid or INA
           (PMID:10380805)
          Length = 732

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +3

Query: 372 VKTGLFVVKVFYLSYKLLLK 431
           V+ GLFVV VFYL+Y  L+K
Sbjct: 3   VQEGLFVVAVFYLAYTQLVK 22


>At5g67380.1 68418.m08496 casein kinase II alpha chain 1 identical
           to casein kinase II, alpha chain 1 (CK II) [Arabidopsis
           thaliana] SWISS-PROT:Q08467; contains protein kinase
           domain, Pfam:PF00069
          Length = 409

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 3   YNHYARYTAREAMDHPYFYPI-VKEQGRM 86
           Y+H  R TA+EAM H YF  +   E  RM
Sbjct: 378 YDHQDRLTAKEAMAHAYFAQVRAAETSRM 406


>At4g10490.1 68417.m01721 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to naringenin,2-oxoglutarate
           3-dioxygenase [Dianthus caryophyllus][SP|Q05964],
           hyoscyamine 6 beta-hydroxylase [Atropa
           belladonna][gi:4996123]; contains PF03171 2OG-Fe(II)
           oxygenase superfamily domain
          Length = 348

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 542 LISNFTYKKSCF*FGHIESHPPQDTRQLKYMNTPTELFQQQFIGEIKHFN 393
           +I+ F +  S   F  I++H   +    K MN   E F+Q     +KH++
Sbjct: 58  IINQFAHACSSCGFFQIKNHGVPEETIKKMMNAAREFFRQSESERVKHYS 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,002,067
Number of Sequences: 28952
Number of extensions: 298616
Number of successful extensions: 635
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)