Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0247
(481 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 135 4e-33
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 135 4e-33
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 86 3e-18
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 76 3e-15
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 44 1e-05
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 35 0.007
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 27 1.9
SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subu... 26 2.6
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 2.6
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 3.4
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb... 26 3.4
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 3.4
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 5.9
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 25 7.8
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 135 bits (326), Expect = 4e-33
Identities = 67/84 (79%), Positives = 71/84 (84%)
Frame = +3
Query: 3 KFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSYPMVQCINEESGEHIVAGAGELHLEIC 182
KFSVSPVV+VAVE KN DLPKLVEGLKRL+KS P V C ESGEHIVAGAGELHLEIC
Sbjct: 482 KFSVSPVVQVAVEVKNGNDLPKLVEGLKRLSKSDPCVLCTTSESGEHIVAGAGELHLEIC 541
Query: 183 LKGLEEDHACIPIKKSDPVVSYRE 254
LK L+EDHA IP+K S PVVSYRE
Sbjct: 542 LKDLQEDHAGIPLKISPPVVSYRE 565
Score = 103 bits (248), Expect = 1e-23
Identities = 43/69 (62%), Positives = 54/69 (78%)
Frame = +2
Query: 269 SDQLCLSKSPNKHNRLFMKAQPMPDGLPEGIDEGRVNPRDDFKTRARYLTEKYGYDVTEA 448
S LSKSPNKHNR+FM A+PM + L I+ G VNPRDDFK RAR + +++G+DVT+A
Sbjct: 571 SSMTALSKSPNKHNRIFMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDVTDA 630
Query: 449 RKIWCFGPE 475
RKIWCFGP+
Sbjct: 631 RKIWCFGPD 639
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 135 bits (326), Expect = 4e-33
Identities = 67/84 (79%), Positives = 71/84 (84%)
Frame = +3
Query: 3 KFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSYPMVQCINEESGEHIVAGAGELHLEIC 182
KFSVSPVV+VAVE KN DLPKLVEGLKRL+KS P V C ESGEHIVAGAGELHLEIC
Sbjct: 482 KFSVSPVVQVAVEVKNGNDLPKLVEGLKRLSKSDPCVLCTTSESGEHIVAGAGELHLEIC 541
Query: 183 LKGLEEDHACIPIKKSDPVVSYRE 254
LK L+EDHA IP+K S PVVSYRE
Sbjct: 542 LKDLQEDHAGIPLKISPPVVSYRE 565
Score = 103 bits (248), Expect = 1e-23
Identities = 43/69 (62%), Positives = 54/69 (78%)
Frame = +2
Query: 269 SDQLCLSKSPNKHNRLFMKAQPMPDGLPEGIDEGRVNPRDDFKTRARYLTEKYGYDVTEA 448
S LSKSPNKHNR+FM A+PM + L I+ G VNPRDDFK RAR + +++G+DVT+A
Sbjct: 571 SSMTALSKSPNKHNRIFMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDVTDA 630
Query: 449 RKIWCFGPE 475
RKIWCFGP+
Sbjct: 631 RKIWCFGPD 639
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 85.8 bits (203), Expect = 3e-18
Identities = 42/81 (51%), Positives = 55/81 (67%)
Frame = +3
Query: 12 VSPVVRVAVEPKNPADLPKLVEGLKRLAKSYPMVQCINEESGEHIVAGAGELHLEICLKG 191
+ P+VRVA+EP P ++ KLV GL L ++ P VQ EE+GEH++ AGE+HLE CLK
Sbjct: 560 MEPIVRVALEPVRPFEMNKLVTGLDMLNQADPCVQIAVEENGEHVIMCAGEIHLERCLKD 619
Query: 192 LEEDHACIPIKKSDPVVSYRE 254
L E A I I+ S P+V YRE
Sbjct: 620 LRERFAKIEIQASQPLVPYRE 640
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 75.8 bits (178), Expect = 3e-15
Identities = 36/78 (46%), Positives = 53/78 (67%)
Frame = +3
Query: 21 VVRVAVEPKNPADLPKLVEGLKRLAKSYPMVQCINEESGEHIVAGAGELHLEICLKGLEE 200
V +VAVEP NP++LPKL++GL++ KSYP+ EESGEH + G GE++++ L L
Sbjct: 600 VFKVAVEPHNPSELPKLLDGLRKTNKSYPLSITKVEESGEHTIFGTGEMYMDCLLYDLRT 659
Query: 201 DHACIPIKKSDPVVSYRE 254
++ I I+ SDPV + E
Sbjct: 660 LYSEIEIRVSDPVARFCE 677
Score = 57.2 bits (132), Expect = 1e-09
Identities = 23/65 (35%), Positives = 37/65 (56%)
Frame = +2
Query: 281 CLSKSPNKHNRLFMKAQPMPDGLPEGIDEGRVNPRDDFKTRARYLTEKYGYDVTEARKIW 460
C S +PNK NR+ M +P+ G+ I+ G+VN K + + + Y +D+ +R IW
Sbjct: 687 CFSDTPNKKNRITMVVEPLEKGISNDIENGKVNINWPQKRISEFFQKNYDWDLLASRSIW 746
Query: 461 CFGPE 475
FGP+
Sbjct: 747 AFGPD 751
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 44.0 bits (99), Expect = 1e-05
Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +3
Query: 6 FSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSYPMVQC-INEESGEHIVAGAGELHLEIC 182
F PV+ ++++PK+ D + L R + P + ++ ES E I++G GELHLE+
Sbjct: 470 FVPEPVISLSLKPKSK-DTTSFSKALNRFQREDPTFRVQLDNESKETIISGMGELHLEVY 528
Query: 183 LKGLEEDHACIPIKKSDPVVSYRE 254
++ + ++ + + P V++RE
Sbjct: 529 VERMRREYK-VDCETGKPRVAFRE 551
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 34.7 bits (76), Expect = 0.007
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 18 PVVRVAVEPKNPADLPKLVEGLKRLAKSYPMVQCINE-ESGEHIVAGAGELHLEICLKGL 194
PV ++EP + D P L+E L + + P + + E+G+ ++ G G +HL++ + L
Sbjct: 443 PVCIASIEPYSLKDEPALLEALANMNREDPSFRYTQDLENGQLLIQGMGIMHLQVSYERL 502
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 26.6 bits (56), Expect = 1.9
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -1
Query: 247 YDTTGSDFLIGMQAWSSSRPLRQISRWSSPAPATMCSPDSSLIHCTMG 104
YDTTG+D ++ SS R WS+ P +P ++ I+ T G
Sbjct: 124 YDTTGTDDVVYEYHPSSERHKSTNDTWSTNLPT---NPTTTAIYSTSG 168
>SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subunit
Tfg3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 241
Score = 26.2 bits (55), Expect = 2.6
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Frame = +3
Query: 51 PADLPKLVEGLKRLAKS--YPMVQCINEESGEHIVA----GAGELHLEI 179
P D+ KL EGL++L + +VQ +NE + GE H+++
Sbjct: 172 PVDMDKLAEGLQKLQEDDLLQVVQMVNENKTPDMYVRNDIEGGEFHIDL 220
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 26.2 bits (55), Expect = 2.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 284 LSKSPNKHNRLFMKAQPMPDGL 349
++KS KHN+L K +P+P L
Sbjct: 243 INKSVKKHNKLVKKHKPLPSTL 264
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.8 bits (54), Expect = 3.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 347 LPEGIDEGRVNPRDDFKT 400
LPE IDEG+++ DD KT
Sbjct: 194 LPEKIDEGKLSDVDDGKT 211
>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 519
Score = 25.8 bits (54), Expect = 3.4
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -1
Query: 445 FGNIISVLFCKIPSASLEVIAGIHATLINALWKTIRHGLSLHEQTVVLV 299
F I SVL C ++ + IA I + +WKTIR LSL +L+
Sbjct: 241 FTFIASVLVCFWDESNHQEIANI-----SDMWKTIRAALSLKNMRQLLI 284
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 3.4
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = -1
Query: 349 KTIRHGLSLHEQTVVLVGRL*E 284
+++RH +SL+E+T + +GRL E
Sbjct: 324 ESVRHLISLNEETWIQIGRLAE 345
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.0 bits (52), Expect = 5.9
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +3
Query: 378 IPAMTSRLALGILQKSTDMMLPKPVRFGALAPRV 479
IP++T R +G L + +++L + ++AP++
Sbjct: 987 IPSLTLRRQIGFLTMTEELLLQISSKLSSVAPKI 1020
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 466 KAPNLTGFGNIISVLFCKIPSASLEVIAGIHATLIN 359
KAP + N+IS++FC++ + +IA + + IN
Sbjct: 78 KAPRIKT-KNLISIIFCEVVAIYSLIIAIVFSAKIN 112
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,004,416
Number of Sequences: 5004
Number of extensions: 39123
Number of successful extensions: 147
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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