Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0247
         (481 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   159   8e-40
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              87   5e-18
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)                 48   5e-06
SB_1790| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.49 
SB_7387| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.65 
SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6)                     29   1.5  
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_47762| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.5  
SB_44839| Best HMM Match : RVT_1 (HMM E-Value=0.071)                   27   6.1  
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)                27   6.1  
SB_22518| Best HMM Match : DUF847 (HMM E-Value=1.10001e-40)            27   6.1  
SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)           27   6.1  
SB_14902| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  159 bits (387), Expect = 8e-40
 Identities = 76/84 (90%), Positives = 78/84 (92%)
 Frame = +3

Query: 3   KFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSYPMVQCINEESGEHIVAGAGELHLEIC 182
           KFSVSPVVRVAVEPKNPADLPKLVEGL RLAKS PMVQ   EESGEHIVAGAGELHLEIC
Sbjct: 472 KFSVSPVVRVAVEPKNPADLPKLVEGLNRLAKSDPMVQSFTEESGEHIVAGAGELHLEIC 531

Query: 183 LKGLEEDHACIPIKKSDPVVSYRE 254
           LK LEEDHACIP+KKS+PVVSYRE
Sbjct: 532 LKDLEEDHACIPLKKSEPVVSYRE 555



 Score =  113 bits (272), Expect = 7e-26
 Identities = 50/71 (70%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
 Frame = +2

Query: 269 SDQLCLSKSPNKHNRLFMKAQPMPDGLPEGIDEG-RVNPRDDFKTRARYLTEKYGYDVTE 445
           S+Q+CLSKSPNKHNRLFM A P+ + LPE ID+G  +NPR DFK RARYL + YG+DV E
Sbjct: 561 SNQMCLSKSPNKHNRLFMTAGPLEEKLPEDIDDGCEINPRQDFKIRARYLADTYGWDVNE 620

Query: 446 ARKIWCFGPEG 478
           ARKIW FGPEG
Sbjct: 621 ARKIWSFGPEG 631


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 87.4 bits (207), Expect = 5e-18
 Identities = 36/84 (42%), Positives = 61/84 (72%)
 Frame = +3

Query: 3   KFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSYPMVQCINEESGEHIVAGAGELHLEIC 182
           KF+    +++AVEP NP++LPK+++GL+++ KSYP++    EESGEH++ G GEL+L+  
Sbjct: 449 KFNTCSTIKIAVEPHNPSELPKMLDGLRKVNKSYPLLTTKVEESGEHVILGTGELYLDCI 508

Query: 183 LKGLEEDHACIPIKKSDPVVSYRE 254
           +  L   ++ I IK +DPV+++ E
Sbjct: 509 MHDLRRMYSEIDIKVADPVIAFCE 532



 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 25/65 (38%), Positives = 38/65 (58%)
 Frame = +2

Query: 281 CLSKSPNKHNRLFMKAQPMPDGLPEGIDEGRVNPRDDFKTRARYLTEKYGYDVTEARKIW 460
           C +++PNK N++ M A+P+  GL E I+  +V    + K    +   KY +D+  AR IW
Sbjct: 542 CFAETPNKKNKVTMIAEPLEKGLAEDIENEKVLISWNKKKLGEFFQTKYDWDLLAARSIW 601

Query: 461 CFGPE 475
            FGPE
Sbjct: 602 AFGPE 606


>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
          Length = 549

 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 16/39 (41%), Positives = 28/39 (71%)
 Frame = +3

Query: 138 EHIVAGAGELHLEICLKGLEEDHACIPIKKSDPVVSYRE 254
           EH++  AGE+HL+ C+  L+  +AC+ +  SDP++ +RE
Sbjct: 2   EHVIIAAGEVHLQRCVDDLKRRYACVELNVSDPIIPFRE 40


>SB_1790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 57  DLPKLVEGLKRLAKSYPMVQC-INEESGEHIVAGAGELHLEI 179
           DL +  + + R  +  P  +   ++ES E I++G GELHL++
Sbjct: 36  DLDQFSKAINRFTREDPTFRVRFDDESKETIISGMGELHLDV 77


>SB_7387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = +3

Query: 117 CINEESGEHIVAGAGELHLEICLKGLEEDH 206
           C NE+SGEH  +  GE +L I ++G+++D+
Sbjct: 18  CFNEDSGEH-YSCHGEENLAISMEGMDKDY 46


>SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6)
          Length = 160

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 78  GLKRLAKSYPMVQCINEESGEHIVAGAGELHLEICLKGLEE 200
           G +   +  P  Q + E   EH+VA +G+L  E C K L +
Sbjct: 17  GRRLSVERVPTWQRVKEFQNEHLVAQSGKLRFEACKKTLSK 57


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = -1

Query: 121  IHCTMG*DLARRLRPSTSLGRSAGFLGSTATRTTGD 14
            I C MG D   RLR ST L R   F+GS     T D
Sbjct: 1062 IECNMGFDAVMRLRTSTGL-RPVDFVGSFYMSNTTD 1096


>SB_47762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -2

Query: 465 KHQILRASVTSYPYFSVRYRARVLKSSRG 379
           +H++++A  T  P F ++YRAR+LK   G
Sbjct: 42  EHKLVKAR-TRIPKFDLKYRARILKRGLG 69


>SB_44839| Best HMM Match : RVT_1 (HMM E-Value=0.071)
          Length = 351

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = -3

Query: 359 CPLEDHQAWAEPS*TDGCACWATLRDRAGPIPQLRL--TVRHDRVRLLDWNASMVLLKTL 186
           CP + + A   PS   GC  W TL  R  PI  +++  +  ++  +++D +   ++  + 
Sbjct: 151 CPAKVYNAIVLPSLLYGCETW-TLYRRHRPINTIKISYSCMNNTKQIIDNHNKRIITASS 209

Query: 185 KTDLKMEFSSTSDN 144
            T++     +T++N
Sbjct: 210 ATEIASSAPTTTNN 223


>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
          Length = 2386

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 21  VVRVAVEPKNPADLPKLVEGLKRLAKSYPMVQCINEESGE 140
           VV +    KN AD  KL + L+R A+SYP    +   SG+
Sbjct: 869 VVHINATSKNAAD-DKLRQSLRRFAQSYPPPATVILVSGD 907


>SB_22518| Best HMM Match : DUF847 (HMM E-Value=1.10001e-40)
          Length = 598

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 480 LPSGPKHQILRASVTSYPYFSVRYRARVLK 391
           + SGP +Q+L  +V S P  ++RY  R L+
Sbjct: 358 IASGPAYQLLDFAVNSGPETAIRYYQRALE 387


>SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)
          Length = 1151

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = -3

Query: 389 HRGDSRDPHQCPLEDHQAWAEPS*TDGCACWATLRDRAGPIPQLR 255
           H G       C + D  +W+E   ++GC   A +R    P+  ++
Sbjct: 381 HAGMCAYRDSCDMNDWTSWSEDVTSEGCKVQARIRTYVSPLKHMQ 425


>SB_14902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 17/71 (23%), Positives = 35/71 (49%)
 Frame = -1

Query: 331 LSLHEQTVVLVGRL*ETELVRFLSYGSRYDTTGSDFLIGMQAWSSSRPLRQISRWSSPAP 152
           LSL    ++L+G++  + L   LS  S    +  D + G+  W ++R ++  + +  P+ 
Sbjct: 150 LSLFCNVLLLIGKIVASYLSGSLSIISSLVDSAVDLVSGIIFWYTTRSIKTTNFYEYPSG 209

Query: 151 ATMCSPDSSLI 119
            T   P + +I
Sbjct: 210 KTRLEPVAVII 220


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,574,138
Number of Sequences: 59808
Number of extensions: 316508
Number of successful extensions: 822
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)