Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0247
(481 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 164 3e-41
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 164 3e-41
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 83 1e-16
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 83 1e-16
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 60 6e-10
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 47 6e-06
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 47 6e-06
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 31 0.57
Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr... 29 1.7
U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ... 29 1.7
U41278-3|AAK31512.1| 453|Caenorhabditis elegans Hypothetical pr... 29 2.3
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 2.3
U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death abno... 28 3.1
AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate ada... 28 3.1
U53344-5|AAA96226.2| 442|Caenorhabditis elegans More of ms prot... 28 4.0
AF209707-1|AAF28335.1| 522|Caenorhabditis elegans phosphoinosit... 28 4.0
AF013489-1|AAC47728.1| 442|Caenorhabditis elegans MOM-1 protein. 28 4.0
AC006708-6|AAF60427.2| 522|Caenorhabditis elegans Phosphoinosit... 28 4.0
U58761-1|AAB00712.1| 333|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr... 27 7.0
AC006648-12|AAF39861.4| 418|Caenorhabditis elegans Btb and math... 27 7.0
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 27 9.3
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 27 9.3
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 164 bits (398), Expect = 3e-41
Identities = 78/84 (92%), Positives = 80/84 (95%)
Frame = +3
Query: 3 KFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSYPMVQCINEESGEHIVAGAGELHLEIC 182
KFSVSPVVRVAVE KNPADLPKLVEGLKRLAKS PMVQCI EESGEHI+AGAGELHLEIC
Sbjct: 492 KFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIFEESGEHIIAGAGELHLEIC 551
Query: 183 LKGLEEDHACIPIKKSDPVVSYRE 254
LK LEEDHACIP+KKSDPVVSYRE
Sbjct: 552 LKDLEEDHACIPLKKSDPVVSYRE 575
Score = 118 bits (283), Expect = 3e-27
Identities = 51/70 (72%), Positives = 58/70 (82%)
Frame = +2
Query: 269 SDQLCLSKSPNKHNRLFMKAQPMPDGLPEGIDEGRVNPRDDFKTRARYLTEKYGYDVTEA 448
S+Q+CLSKSPNKHNRL AQPMPDGL + I+ G VN RD+FK RA+ L EKY YDVTEA
Sbjct: 581 SNQICLSKSPNKHNRLHCTAQPMPDGLADDIEGGTVNARDEFKARAKILAEKYEYDVTEA 640
Query: 449 RKIWCFGPEG 478
RKIWCFGP+G
Sbjct: 641 RKIWCFGPDG 650
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 164 bits (398), Expect = 3e-41
Identities = 78/84 (92%), Positives = 80/84 (95%)
Frame = +3
Query: 3 KFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSYPMVQCINEESGEHIVAGAGELHLEIC 182
KFSVSPVVRVAVE KNPADLPKLVEGLKRLAKS PMVQCI EESGEHI+AGAGELHLEIC
Sbjct: 492 KFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIFEESGEHIIAGAGELHLEIC 551
Query: 183 LKGLEEDHACIPIKKSDPVVSYRE 254
LK LEEDHACIP+KKSDPVVSYRE
Sbjct: 552 LKDLEEDHACIPLKKSDPVVSYRE 575
Score = 112 bits (269), Expect = 1e-25
Identities = 49/70 (70%), Positives = 57/70 (81%)
Frame = +2
Query: 269 SDQLCLSKSPNKHNRLFMKAQPMPDGLPEGIDEGRVNPRDDFKTRARYLTEKYGYDVTEA 448
S+Q+CLSKSPNKHNRL AQPMPDGL + I+ G V+ RD+FK RA+Y EKY Y VTEA
Sbjct: 581 SNQICLSKSPNKHNRLHCTAQPMPDGLADDIEGGTVSARDEFKARAKYPGEKYEYAVTEA 640
Query: 449 RKIWCFGPEG 478
RKIWCFGP+G
Sbjct: 641 RKIWCFGPDG 650
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 83.0 bits (196), Expect = 1e-16
Identities = 36/91 (39%), Positives = 62/91 (68%)
Frame = +3
Query: 3 KFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSYPMVQCINEESGEHIVAGAGELHLEIC 182
KF+ V++AVEP NP++LPK+++GL+++ KSYP++ EESGEH++ G GE +++
Sbjct: 585 KFNTRSCVKLAVEPINPSELPKMLDGLRKVNKSYPLLTTRVEESGEHVLLGTGEFYMDCV 644
Query: 183 LKGLEEDHACIPIKKSDPVVSYREP*LRNRT 275
+ + + + I IK +DPVV++ E + T
Sbjct: 645 MHDMRKVFSEIDIKVADPVVTFNETVIETST 675
Score = 51.2 bits (117), Expect = 4e-07
Identities = 22/65 (33%), Positives = 36/65 (55%)
Frame = +2
Query: 281 CLSKSPNKHNRLFMKAQPMPDGLPEGIDEGRVNPRDDFKTRARYLTEKYGYDVTEARKIW 460
C +++PNK N++ M A+P+ L E I+ V + + + KY +D+ AR IW
Sbjct: 678 CFAETPNKKNKITMMAEPLEKQLDEDIENEVVQIGWNRRRLGEFFQTKYNWDLLAARSIW 737
Query: 461 CFGPE 475
FGP+
Sbjct: 738 AFGPD 742
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 83.0 bits (196), Expect = 1e-16
Identities = 36/91 (39%), Positives = 62/91 (68%)
Frame = +3
Query: 3 KFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSYPMVQCINEESGEHIVAGAGELHLEIC 182
KF+ V++AVEP NP++LPK+++GL+++ KSYP++ EESGEH++ G GE +++
Sbjct: 460 KFNTRSCVKLAVEPINPSELPKMLDGLRKVNKSYPLLTTRVEESGEHVLLGTGEFYMDCV 519
Query: 183 LKGLEEDHACIPIKKSDPVVSYREP*LRNRT 275
+ + + + I IK +DPVV++ E + T
Sbjct: 520 MHDMRKVFSEIDIKVADPVVTFNETVIETST 550
Score = 47.6 bits (108), Expect = 5e-06
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +2
Query: 281 CLSKSPNKHNRLFMKAQPMPDGLPEGIDEGRVNPRDDFKTRARYLTEKYGYDVTEARKIW 460
C +++PNK N++ M A+P+ L E I+ V + + + KY +D+ AR IW
Sbjct: 553 CFAETPNKKNKITMMAEPLEKQLDEDIENEVVQIGWNRRRLGEFFQTKYNWDLLAARSIW 612
Query: 461 CFG 469
FG
Sbjct: 613 AFG 615
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 60.5 bits (140), Expect = 6e-10
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +3
Query: 18 PVVRVAVEPKNPADLPKLVEGLKRLAKSYPMVQC-INEESGEHIVAGAGELHLEICLKGL 194
PV+ +A++P N D ++ L R K P + N+E+ E IV+G GELHLEI + +
Sbjct: 446 PVISMAIKPVNRKDADNFIKALTRFTKEDPTFRREYNQEAKETIVSGMGELHLEIYAQRM 505
Query: 195 EEDHACIPIKKSDPVVSYRE 254
+ ++ C P++ P V+YRE
Sbjct: 506 KSEYNC-PVELGKPTVAYRE 524
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 47.2 bits (107), Expect = 6e-06
Identities = 28/90 (31%), Positives = 48/90 (53%)
Frame = +3
Query: 21 VVRVAVEPKNPADLPKLVEGLKRLAKSYPMVQCINEESGEHIVAGAGELHLEICLKGLEE 200
+VRV++ + D+ L E LK LA ++ + E+GE + AGE+HL+ C+K L
Sbjct: 477 LVRVSISTQQLDDMDDLREKLKLLALLDTSLKVMELENGELAMVTAGEVHLQKCIKDL-N 535
Query: 201 DHACIPIKKSDPVVSYREP*LRNRTSSVSQ 290
D + + S+P+V + E + + S Q
Sbjct: 536 DLGLVDLDVSEPIVPFMETVIEDSVLSAPQ 565
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 47.2 bits (107), Expect = 6e-06
Identities = 28/90 (31%), Positives = 48/90 (53%)
Frame = +3
Query: 21 VVRVAVEPKNPADLPKLVEGLKRLAKSYPMVQCINEESGEHIVAGAGELHLEICLKGLEE 200
+VRV++ + D+ L E LK LA ++ + E+GE + AGE+HL+ C+K L
Sbjct: 477 LVRVSISTQQLDDMDDLREKLKLLALLDTSLKVMELENGELAMVTAGEVHLQKCIKDL-N 535
Query: 201 DHACIPIKKSDPVVSYREP*LRNRTSSVSQ 290
D + + S+P+V + E + + S Q
Sbjct: 536 DLGLVDLDVSEPIVPFMETVIEDSVLSAPQ 565
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 30.7 bits (66), Expect = 0.57
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +3
Query: 36 VEPKNPADLPKLVEGLKRLAKSYPMVQC-INEESGEHIVAGAGELHLEICLKGLEEDHAC 212
+EP + L + + L+ L + P ++ + ++G+ IV GELHLE L+ ++
Sbjct: 399 IEPPSNRQLNQFNKALEELTREDPSMKIRFDRDTGQTIVETQGELHLEAIKDRLKRNYK- 457
Query: 213 IPIKKSDPVVSYRE 254
+ + V+YRE
Sbjct: 458 LDVFIGKLQVAYRE 471
>Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical protein
F56H9.5 protein.
Length = 1139
Score = 29.1 bits (62), Expect = 1.7
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = -3
Query: 299 WATLRDRAGPIPQ-LRLTVRHDRVRLLDWNASMVLLKTLKTDLKMEFSSTSDNVFS*FFI 123
W +R +A P LRL + R D + + + KT+K+ +S+ D +FS +
Sbjct: 888 WYYMRQQAWASPHALRLLEHANTAREYDVWSHIYISKTIKSGCGDIMTSSVDMIFSFLML 947
Query: 122 NTLHHGVRFSQTFKTFY 72
+ L+ +R ++ F+
Sbjct: 948 DDLNSIIRIHESLMAFW 964
>Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical protein
F56H9.5 protein.
Length = 1139
Score = 29.1 bits (62), Expect = 1.7
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = -3
Query: 299 WATLRDRAGPIPQ-LRLTVRHDRVRLLDWNASMVLLKTLKTDLKMEFSSTSDNVFS*FFI 123
W +R +A P LRL + R D + + + KT+K+ +S+ D +FS +
Sbjct: 888 WYYMRQQAWASPHALRLLEHANTAREYDVWSHIYISKTIKSGCGDIMTSSVDMIFSFLML 947
Query: 122 NTLHHGVRFSQTFKTFY 72
+ L+ +R ++ F+
Sbjct: 948 DDLNSIIRIHESLMAFW 964
>U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein
protein.
Length = 1139
Score = 29.1 bits (62), Expect = 1.7
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = -3
Query: 299 WATLRDRAGPIPQ-LRLTVRHDRVRLLDWNASMVLLKTLKTDLKMEFSSTSDNVFS*FFI 123
W +R +A P LRL + R D + + + KT+K+ +S+ D +FS +
Sbjct: 888 WYYMRQQAWASPHALRLLEHANTAREYDVWSHIYISKTIKSGCGDIMTSSVDMIFSFLML 947
Query: 122 NTLHHGVRFSQTFKTFY 72
+ L+ +R ++ F+
Sbjct: 948 DDLNSIIRIHESLMAFW 964
>U41278-3|AAK31512.1| 453|Caenorhabditis elegans Hypothetical
protein F33G12.4 protein.
Length = 453
Score = 28.7 bits (61), Expect = 2.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 6 FSVSPVVRVAVEPKNPADLPKLVEGLKRLAK 98
F +P V V + NP L +L+E ++++ K
Sbjct: 79 FQTTPAVMVCISKANPEALAQLIEAIRKIVK 109
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -1
Query: 79 PSTSLGRSAGFLGSTATRTTGDTLN 5
PSTS G AGFL STA + G N
Sbjct: 142 PSTSSGLPAGFLNSTANSSVGANNN 166
>U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death
abnormality protein 6 protein.
Length = 492
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 262 SYGSRYDTTGSDFLIGMQAWSSSRPLRQISRWSSPAPATMCSPDSSLI 119
S + Y+ G+DFL G+Q + P +S A A + P+SS +
Sbjct: 382 STAAEYNPFGADFLSGIQNGKEAPPSASAELLASEAIARLPKPESSSV 429
>AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate
adaptor protein CED-6 protein.
Length = 492
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 262 SYGSRYDTTGSDFLIGMQAWSSSRPLRQISRWSSPAPATMCSPDSSLI 119
S + Y+ G+DFL G+Q + P +S A A + P+SS +
Sbjct: 382 STAAEYNPFGADFLSGIQNGKEAPPSASAELLASEAIARLPKPESSSV 429
>U53344-5|AAA96226.2| 442|Caenorhabditis elegans More of ms protein
1 protein.
Length = 442
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -3
Query: 164 FSSTSDNVFS*FFINTLHHGVRFSQTFKTFY*LGQIS 54
F+ST+ NVF F +++L HG+ F T T LG I+
Sbjct: 303 FNSTACNVFFTFAVSSLLHGLDFQMTI-TLLALGFIA 338
>AF209707-1|AAF28335.1| 522|Caenorhabditis elegans phosphoinositide
3-kinase adaptersubunit protein.
Length = 522
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 169 WSSPAPATMCSPDSSLIHCT 110
W SP+P T S DS L+H T
Sbjct: 495 WDSPSPDTPSSSDSRLVHPT 514
>AF013489-1|AAC47728.1| 442|Caenorhabditis elegans MOM-1 protein.
Length = 442
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -3
Query: 164 FSSTSDNVFS*FFINTLHHGVRFSQTFKTFY*LGQIS 54
F+ST+ NVF F +++L HG+ F T T LG I+
Sbjct: 303 FNSTACNVFFTFAVSSLLHGLDFQMTI-TLLALGFIA 338
>AC006708-6|AAF60427.2| 522|Caenorhabditis elegans Phosphoinositide
kinase adaptersubunit protein 1 protein.
Length = 522
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 169 WSSPAPATMCSPDSSLIHCT 110
W SP+P T S DS L+H T
Sbjct: 495 WDSPSPDTPSSSDSRLVHPT 514
>U58761-1|AAB00712.1| 333|Caenorhabditis elegans Hypothetical
protein C01F1.4 protein.
Length = 333
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -1
Query: 436 IISVLFCKIPSASLEVIAGIHATLINALWKTIRHGLSL 323
+IS L+CK+ SASLE+ ++ ++ W +I G SL
Sbjct: 32 VISRLYCKMRSASLEL---TYSLALSDTWTSIVIGFSL 66
>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical
protein C23H4.6 protein.
Length = 1137
Score = 27.1 bits (57), Expect = 7.0
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +3
Query: 108 MVQCINEESGEHIVAGAGELHLEICLKGLEEDHACIPIKKSDPVVSYREP*LRNRTSS 281
M QC N E ++I GEL ++ + LEE+ CI K D + +P ++ + S
Sbjct: 746 MTQCANTEQVDNINDALGELQEKLSI--LEEEAYCIQ-DKLDELDEKFQPAIKTKNES 800
>AC006648-12|AAF39861.4| 418|Caenorhabditis elegans Btb and math
domain containingprotein 19 protein.
Length = 418
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 339 LMVFQRALMRVA*IPAMTSRLALGILQKSTDMMLPKPVR 455
L FQ L + +PA+ +GIL +TD +P P++
Sbjct: 196 LTEFQNLLEVLHGMPAIDENTVVGILHLATDYKMPLPIQ 234
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +2
Query: 269 SDQLCLSKSPNKHNRLFMKAQPMPDGLPEGIDEGRVNPRDDFKTRARYLTEKYGY 433
SD + LS + +F KA +P+G+ +G NP R T + GY
Sbjct: 1436 SDVIMLSDDEDDDCVVFEKA--VPNGVAQGSSTSTPNPESSINCEVRVETSQAGY 1488
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +2
Query: 269 SDQLCLSKSPNKHNRLFMKAQPMPDGLPEGIDEGRVNPRDDFKTRARYLTEKYGY 433
SD + LS + +F KA +P+G+ +G NP R T + GY
Sbjct: 1436 SDVIMLSDDEDDDCVVFEKA--VPNGVAQGSSTSTPNPESSINCEVRVETSQAGY 1488
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,190,149
Number of Sequences: 27780
Number of extensions: 224395
Number of successful extensions: 673
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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