Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0247
         (481 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.2  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   6.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   6.9  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +2

Query: 299 NKHNRLFMKAQPMPDGLPEGIDEGRVNPRDDFKTRARYLTEKYGY 433
           N H  +F+    +PD +P  +   R+   +D     +Y ++ YG+
Sbjct: 558 NSHESVFV----VPDEVPSDVLYNRLVVSEDGSETFKYSSQPYGF 598


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +2

Query: 299 NKHNRLFMKAQPMPDGLPEGIDEGRVNPRDDFKTRARYLTEKYGY 433
           N H  +F+    +PD +P  +   R+   +D     +Y ++ YG+
Sbjct: 558 NSHESVFV----VPDEVPSDVLYNRLVVSEDGSETFKYSSQPYGF 598


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 259  YGSRYDTTGSDFLIGMQAWSSSRPLRQISRWSSPAP 152
            YG+ YD  GS   +G ++  S+R +  +S    P P
Sbjct: 1827 YGAPYDHYGSRGSVGRRSVGSARNI-PVSGSPEPPP 1861


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -1

Query: 223 LIGMQAWSSSRPLRQISRWSSPAPATMCSPDSSLIHCTMG 104
           L G+   SSS P        + A A + S   S+  C++G
Sbjct: 140 LHGLHGLSSSAPTGSSCGPGAAAAAALLSKRRSVSECSLG 179


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 85  NVWLNLTPWCSV 120
           N WL  T WC V
Sbjct: 110 NRWLFTTDWCDV 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,888
Number of Sequences: 438
Number of extensions: 2502
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)