Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0244
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymera...    27   2.2  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    27   2.2  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   6.7  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    25   8.9  

>SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymerase
           I and III subunit Rpc19 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +1

Query: 469 ALPYNREVKPK---QEAPLPIPSSPMKLLLEDLSD*MCSLITEMPAEMLTRKQSTT 627
           ++P+  E K     Q AP       ++  L+DL D +C  +TE   E L R  STT
Sbjct: 66  SIPHPSEAKMNFRIQTAPSTTAVDVLRKGLDDLID-LCDAVTEKFTEQLPRDTSTT 120


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 460 SECSMCSPLDTGKMPPWILLHSL 392
           SE +MC PL  G  P W L+  L
Sbjct: 268 SEMAMCYPLMQGHQPEWALVRGL 290


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 487 EVKPKQEAPLPIPSSPMKL 543
           + +PK+E P P PSSP  L
Sbjct: 48  DTQPKEEKPEPSPSSPFGL 66


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +3

Query: 465 HRVAL*QRS*AKTGSTFAYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQEAVYNQTLN 638
           H VAL   S A+ G  F   ++P+E  A       +Q    DAS + ++  VYN   N
Sbjct: 235 HEVALFMPSSAE-GEEFLSYYLPSEETAEE-----IQAKVNDASADVHEPFVYNHFRN 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,387
Number of Sequences: 5004
Number of extensions: 61520
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)