Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0244
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1396 + 29855256-29855328,29856019-29856180,29856466-298565...    32   0.43 

>06_03_1396 +
           29855256-29855328,29856019-29856180,29856466-29856516,
           29857189-29857277,29857632-29857709,29857811-29858014,
           29858101-29858172,29858262-29858306
          Length = 257

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
 Frame = +1

Query: 337 IQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMDYTYYIQNFTALP-YNREVKPKQEAP 513
           + AG   E  VG  N+G     V ++ ++   P D+  Y QN T    +N  V    +A 
Sbjct: 80  VLAGEETELLVGLQNEGESTLNVVAIHSTLHLPFDHKMYGQNLTVQNFFNASVPVSVQAT 139

Query: 514 LPIPSSPMKLL 546
            P   +  K L
Sbjct: 140 FPYTFAVSKFL 150



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +3

Query: 507 STFAYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFFL 683
           +TF Y+F  ++      + L   + Y +   N YQ   YN T+ +VE    L  E+ FL
Sbjct: 138 ATFPYTFAVSKFLQPGAYDLVGYIVY-EIDQNPYQNVFYNGTVEVVEAGGLLSVESVFL 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,498,214
Number of Sequences: 37544
Number of extensions: 403372
Number of successful extensions: 924
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)