Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0244
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)                   87   1e-17
SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)                  29   3.1  
SB_53086| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14)                   29   4.1  
SB_47533| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_12693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0014)          28   7.2  
SB_1458| Best HMM Match : PAN (HMM E-Value=0.0066)                     28   9.5  

>SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)
          Length = 667

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 34/62 (54%), Positives = 50/62 (80%)
 Frame = +3

Query: 507 STFAYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFFLY 686
           ++F Y+F P+E+F GRPFGL++ L Y+D  G  Y++AV+N+T+ +VE  EG+DGETFFLY
Sbjct: 217 ASFEYAFRPHESFGGRPFGLSINLLYKDTDGKMYRDAVFNETVQLVESDEGMDGETFFLY 276

Query: 687 VF 692
           +F
Sbjct: 277 LF 278



 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 42/86 (48%), Positives = 49/86 (56%)
 Frame = +1

Query: 253 DVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRY 432
           D +K S D DT ILFTK             AG   +  V F N G  D++V+ MEAS RY
Sbjct: 138 DALKPSPDADTVILFTKNTEQ------QFSAGLVSKCLVSFSNNGRNDFMVDMMEASLRY 191

Query: 433 PMDYTYYIQNFTALPYNREVKPKQEA 510
           P DY+YYIQNFTA  YN  VKP  +A
Sbjct: 192 PQDYSYYIQNFTAFQYNTVVKPGHQA 217


>SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)
          Length = 1828

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = +1

Query: 283 TTILFTKPVPSLGDLTFDIQ-AGYPVEFFVGFINKGSVDYVVESMEASFRYPMDYTYYIQ 459
           TT+ FTK V    DL+ D    GY V   V            ++ E +   P+ YT  I+
Sbjct: 744 TTVRFTKGVARFTDLSIDTPGTGYVVNMTVSTTPSSMYHGTAQTEEITIEEPLLYTSRIE 803

Query: 460 NFTALPY 480
               L Y
Sbjct: 804 AILNLQY 810


>SB_53086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 667

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 468 GEVLNVVCVVHWIPERCLH 412
           G  L V+C   W+ ERCLH
Sbjct: 142 GFTLQVICSQEWVRERCLH 160


>SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14)
          Length = 1624

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 596 RKCLPGSSLQPDTQHCGSIRRSRWRDILLICLPWCWWSVGSRRRTASPR 742
           R+  PG S+   +  CGS+     +     C PW W  +G   R  +PR
Sbjct: 658 RQSAPGRSMAITSLLCGSLSNDGRQ-----CYPWGWSPIGQYPRRCAPR 701


>SB_47533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 729 VLRREPTLHQHQGRHIRRMSLHLDLRILPQC*VSGC 622
           ++RREP + + + R++ RM    + R+ P C + GC
Sbjct: 94  LIRREPHVKRAEERNLARMLRMFNSRLPPDCFLIGC 129


>SB_12693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0014)
          Length = 413

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 516 QRCFLFWLNFSVIRQRGEVLNVVCVVHWIPERCLH 412
           Q C++ +  F  IR   EV   +C+ H+   R LH
Sbjct: 56  QECYIVYAPFVRIRVEDEVTCSLCIEHFTDPRVLH 90


>SB_1458| Best HMM Match : PAN (HMM E-Value=0.0066)
          Length = 403

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 254 MLLSHLRILIQQYCSPNLCLAWVT*LSIFKLVTQWNFLWASSTR 385
           +LLS  + +I QYC    C A     S  + VT+  +LW +S R
Sbjct: 105 ILLSRSKHVISQYCPTGTCYAGS--FSSKEHVTKGRYLWGASYR 146


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,484,241
Number of Sequences: 59808
Number of extensions: 463519
Number of successful extensions: 1132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)