Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0244
(762 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z12830-1|CAA78290.1| 286|Homo sapiens SSR alpha subunit protein. 90 7e-18
CR456961-1|CAG33242.1| 286|Homo sapiens SSR1 protein. 90 7e-18
BT007387-1|AAP36051.1| 286|Homo sapiens signal sequence recepto... 90 7e-18
BC007710-1|AAH07710.1| 286|Homo sapiens signal sequence recepto... 90 7e-18
AL139095-1|CAI16444.1| 286|Homo sapiens signal sequence recepto... 90 7e-18
AK222809-1|BAD96529.1| 286|Homo sapiens signal sequence recepto... 90 7e-18
AK222762-1|BAD96482.1| 286|Homo sapiens signal sequence recepto... 90 7e-18
AK075562-1|BAC11701.1| 259|Homo sapiens protein ( Homo sapiens ... 90 7e-18
AF156965-1|AAD48778.1| 286|Homo sapiens translocon-associated p... 90 7e-18
>Z12830-1|CAA78290.1| 286|Homo sapiens SSR alpha subunit protein.
Length = 286
Score = 90.2 bits (214), Expect = 7e-18
Identities = 36/62 (58%), Positives = 49/62 (79%)
Frame = +3
Query: 507 STFAYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFFLY 686
+TF YSFIP E GRPFGL + LNY+D +GN +Q+AV+NQT+ ++E +GLDGET F+Y
Sbjct: 152 ATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMY 211
Query: 687 VF 692
+F
Sbjct: 212 MF 213
Score = 87.0 bits (206), Expect = 6e-17
Identities = 47/95 (49%), Positives = 62/95 (65%), Gaps = 3/95 (3%)
Frame = +1
Query: 262 KSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMD 441
++S DTTILF K G+ D A V+F VGF NKG+ D++VES++ASFRYP D
Sbjct: 78 EASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQD 129
Query: 442 YTYYIQNFTALPYNREVKPKQEAPLP---IPSSPM 537
+ +YIQNFTALP N V P+++A IP+ PM
Sbjct: 130 HQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPM 164
>CR456961-1|CAG33242.1| 286|Homo sapiens SSR1 protein.
Length = 286
Score = 90.2 bits (214), Expect = 7e-18
Identities = 36/62 (58%), Positives = 49/62 (79%)
Frame = +3
Query: 507 STFAYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFFLY 686
+TF YSFIP E GRPFGL + LNY+D +GN +Q+AV+NQT+ ++E +GLDGET F+Y
Sbjct: 152 ATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMY 211
Query: 687 VF 692
+F
Sbjct: 212 MF 213
Score = 89.0 bits (211), Expect = 2e-17
Identities = 48/95 (50%), Positives = 62/95 (65%), Gaps = 3/95 (3%)
Frame = +1
Query: 262 KSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMD 441
++S DTTILF K G+ D A V+F VGF NKG+ D++VES++ASFRYP D
Sbjct: 78 EASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQD 129
Query: 442 YTYYIQNFTALPYNREVKPKQEAPLP---IPSSPM 537
Y +YIQNFTALP N V P+++A IP+ PM
Sbjct: 130 YQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPM 164
>BT007387-1|AAP36051.1| 286|Homo sapiens signal sequence receptor,
alpha (translocon-associated protein alpha) protein.
Length = 286
Score = 90.2 bits (214), Expect = 7e-18
Identities = 36/62 (58%), Positives = 49/62 (79%)
Frame = +3
Query: 507 STFAYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFFLY 686
+TF YSFIP E GRPFGL + LNY+D +GN +Q+AV+NQT+ ++E +GLDGET F+Y
Sbjct: 152 ATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMY 211
Query: 687 VF 692
+F
Sbjct: 212 MF 213
Score = 89.0 bits (211), Expect = 2e-17
Identities = 48/95 (50%), Positives = 62/95 (65%), Gaps = 3/95 (3%)
Frame = +1
Query: 262 KSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMD 441
++S DTTILF K G+ D A V+F VGF NKG+ D++VES++ASFRYP D
Sbjct: 78 EASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQD 129
Query: 442 YTYYIQNFTALPYNREVKPKQEAPLP---IPSSPM 537
Y +YIQNFTALP N V P+++A IP+ PM
Sbjct: 130 YQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPM 164
>BC007710-1|AAH07710.1| 286|Homo sapiens signal sequence receptor,
alpha (translocon-associated protein alpha) protein.
Length = 286
Score = 90.2 bits (214), Expect = 7e-18
Identities = 36/62 (58%), Positives = 49/62 (79%)
Frame = +3
Query: 507 STFAYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFFLY 686
+TF YSFIP E GRPFGL + LNY+D +GN +Q+AV+NQT+ ++E +GLDGET F+Y
Sbjct: 152 ATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMY 211
Query: 687 VF 692
+F
Sbjct: 212 MF 213
Score = 89.0 bits (211), Expect = 2e-17
Identities = 48/95 (50%), Positives = 62/95 (65%), Gaps = 3/95 (3%)
Frame = +1
Query: 262 KSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMD 441
++S DTTILF K G+ D A V+F VGF NKG+ D++VES++ASFRYP D
Sbjct: 78 EASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQD 129
Query: 442 YTYYIQNFTALPYNREVKPKQEAPLP---IPSSPM 537
Y +YIQNFTALP N V P+++A IP+ PM
Sbjct: 130 YQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPM 164
>AL139095-1|CAI16444.1| 286|Homo sapiens signal sequence receptor,
alpha (translocon-associated protein alpha) protein.
Length = 286
Score = 90.2 bits (214), Expect = 7e-18
Identities = 36/62 (58%), Positives = 49/62 (79%)
Frame = +3
Query: 507 STFAYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFFLY 686
+TF YSFIP E GRPFGL + LNY+D +GN +Q+AV+NQT+ ++E +GLDGET F+Y
Sbjct: 152 ATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMY 211
Query: 687 VF 692
+F
Sbjct: 212 MF 213
Score = 89.0 bits (211), Expect = 2e-17
Identities = 48/95 (50%), Positives = 62/95 (65%), Gaps = 3/95 (3%)
Frame = +1
Query: 262 KSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMD 441
++S DTTILF K G+ D A V+F VGF NKG+ D++VES++ASFRYP D
Sbjct: 78 EASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQD 129
Query: 442 YTYYIQNFTALPYNREVKPKQEAPLP---IPSSPM 537
Y +YIQNFTALP N V P+++A IP+ PM
Sbjct: 130 YQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPM 164
>AK222809-1|BAD96529.1| 286|Homo sapiens signal sequence receptor,
alpha variant protein.
Length = 286
Score = 90.2 bits (214), Expect = 7e-18
Identities = 36/62 (58%), Positives = 49/62 (79%)
Frame = +3
Query: 507 STFAYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFFLY 686
+TF YSFIP E GRPFGL + LNY+D +GN +Q+AV+NQT+ ++E +GLDGET F+Y
Sbjct: 152 ATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMY 211
Query: 687 VF 692
+F
Sbjct: 212 MF 213
Score = 89.0 bits (211), Expect = 2e-17
Identities = 48/95 (50%), Positives = 62/95 (65%), Gaps = 3/95 (3%)
Frame = +1
Query: 262 KSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMD 441
++S DTTILF K G+ D A V+F VGF NKG+ D++VES++ASFRYP D
Sbjct: 78 EASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQD 129
Query: 442 YTYYIQNFTALPYNREVKPKQEAPLP---IPSSPM 537
Y +YIQNFTALP N V P+++A IP+ PM
Sbjct: 130 YQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPM 164
>AK222762-1|BAD96482.1| 286|Homo sapiens signal sequence receptor,
alpha variant protein.
Length = 286
Score = 90.2 bits (214), Expect = 7e-18
Identities = 36/62 (58%), Positives = 49/62 (79%)
Frame = +3
Query: 507 STFAYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFFLY 686
+TF YSFIP E GRPFGL + LNY+D +GN +Q+AV+NQT+ ++E +GLDGET F+Y
Sbjct: 152 ATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMY 211
Query: 687 VF 692
+F
Sbjct: 212 MF 213
Score = 89.0 bits (211), Expect = 2e-17
Identities = 48/95 (50%), Positives = 62/95 (65%), Gaps = 3/95 (3%)
Frame = +1
Query: 262 KSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMD 441
++S DTTILF K G+ D A V+F VGF NKG+ D++VES++ASFRYP D
Sbjct: 78 EASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQD 129
Query: 442 YTYYIQNFTALPYNREVKPKQEAPLP---IPSSPM 537
Y +YIQNFTALP N V P+++A IP+ PM
Sbjct: 130 YQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPM 164
>AK075562-1|BAC11701.1| 259|Homo sapiens protein ( Homo sapiens
cDNA PSEC0262 fis, clone NT2RP3004505, highly similar to
TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT PRECURSOR.
).
Length = 259
Score = 90.2 bits (214), Expect = 7e-18
Identities = 36/62 (58%), Positives = 49/62 (79%)
Frame = +3
Query: 507 STFAYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFFLY 686
+TF YSFIP E GRPFGL + LNY+D +GN +Q+AV+NQT+ ++E +GLDGET F+Y
Sbjct: 125 ATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMY 184
Query: 687 VF 692
+F
Sbjct: 185 MF 186
Score = 86.6 bits (205), Expect = 9e-17
Identities = 41/75 (54%), Positives = 52/75 (69%), Gaps = 3/75 (4%)
Frame = +1
Query: 322 DLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMDYTYYIQNFTALPYNREVKPK 501
DL D A V+F VGF NKG+ D++VES++ASFRYP DY +YIQNFTALP N V P+
Sbjct: 63 DLVEDFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQ 122
Query: 502 QEAPLP---IPSSPM 537
++A IP+ PM
Sbjct: 123 RQATFEYSFIPAEPM 137
>AF156965-1|AAD48778.1| 286|Homo sapiens translocon-associated
protein alpha subunit protein.
Length = 286
Score = 90.2 bits (214), Expect = 7e-18
Identities = 36/62 (58%), Positives = 49/62 (79%)
Frame = +3
Query: 507 STFAYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFFLY 686
+TF YSFIP E GRPFGL + LNY+D +GN +Q+AV+NQT+ ++E +GLDGET F+Y
Sbjct: 152 ATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMY 211
Query: 687 VF 692
+F
Sbjct: 212 MF 213
Score = 89.0 bits (211), Expect = 2e-17
Identities = 48/95 (50%), Positives = 62/95 (65%), Gaps = 3/95 (3%)
Frame = +1
Query: 262 KSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMD 441
++S DTTILF K G+ D A V+F VGF NKG+ D++VES++ASFRYP D
Sbjct: 78 EASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQD 129
Query: 442 YTYYIQNFTALPYNREVKPKQEAPLP---IPSSPM 537
Y +YIQNFTALP N V P+++A IP+ PM
Sbjct: 130 YQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPM 164
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,578,404
Number of Sequences: 237096
Number of extensions: 2272420
Number of successful extensions: 4505
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4505
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9144232952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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