Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0244
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical ...    76   3e-14
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical
           protein Y71F9AM.6 protein.
          Length = 257

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 34/79 (43%), Positives = 49/79 (62%)
 Frame = +1

Query: 280 DTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMDYTYYIQ 459
           D  + F    PS  ++  +   G PV++ +GF NKG  D+VV+  E SFR+P D++Y++Q
Sbjct: 48  DAGLAFHFVQPSDANVVREFYTGKPVKYLIGFQNKGEKDFVVKYAETSFRFPTDHSYHLQ 107

Query: 460 NFTALPYNREVKPKQEAPL 516
           NFT   YNR V PK+E  L
Sbjct: 108 NFTRGEYNRRVAPKEEVTL 126



 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 38/90 (42%), Positives = 50/90 (55%)
 Frame = +3

Query: 423 FPVSNGLHILHSELHRVAL*QRS*AKTGSTFAYSFIPNEAFAGRPFGLNVQLNYRDASGN 602
           FP  +  H+      R    +R   K   T  Y F  +E FAGRP GL V ++Y+DA GN
Sbjct: 98  FPTDHSYHL--QNFTRGEYNRRVAPKEEVTLDYGFYAHETFAGRPVGLVVNVHYQDADGN 155

Query: 603 AYQEAVYNQTLNIVEVSEGLDGETFFLYVF 692
            +   VYNQT+NI+E   G  GET FL++F
Sbjct: 156 VFVNNVYNQTINIMEDDSGFSGETGFLFIF 185


>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical protein
            C27H6.1 protein.
          Length = 1657

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 634  STLWKYPKV*MERHSSYMSSLVLVECWLSSQDSKPSLHWPDVD 762
            S +W+ P++  + H++Y S L+     LSS D  P    P  D
Sbjct: 1482 SLVWRIPRLPEKHHAAYKSHLLKCRFELSSFDLMPEEFLPRCD 1524


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,672,153
Number of Sequences: 27780
Number of extensions: 349863
Number of successful extensions: 1011
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)