Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0243
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    32   0.098
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    30   0.39 
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    29   0.52 
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    29   0.52 
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c...    28   1.2  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    28   1.6  
SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosa...    27   2.8  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            26   4.8  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    26   4.8  
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    25   8.5  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    25   8.5  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    25   8.5  

>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 31.9 bits (69), Expect = 0.098
 Identities = 22/63 (34%), Positives = 30/63 (47%)
 Frame = +3

Query: 42  AGESGCNPLATGILTDLFAEHQRALVLSIFNWGIYGGYGIAFPVGRYIPDLNIWGLNWRL 221
           AG +    +A GI  DLF E    + +S+F W   GG  I  P+   + D+N     WR 
Sbjct: 183 AGSTALTNVAGGI-PDLFPEDTAGVPMSLFVWACAGG-AIGAPMATGV-DINA-KYGWRW 238

Query: 222 CYY 230
            YY
Sbjct: 239 LYY 241


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 269 TSGQRHQTHDSSSVVAQAPVQTPNIQVRDVPSNRESYTVSPINTP 135
           TSG   +T   SS V+ +     N  + D+PS   S T S +++P
Sbjct: 365 TSGNLSRTGSESSAVSLSDTTNLNTPISDIPSPGSSTTCSNLSSP 409


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +3

Query: 42  AGESGCNPLAT--GILTDLFAEHQRALVLSIFNWGIYGGYGIAFPVGRYIPDLNIW 203
           AG  G + LA     + D+F        +S+F WG   G  I  P+G  + D   W
Sbjct: 188 AGAFGSSALANVASSMCDIFTPETVGFGISLFVWGANAGASIGSPIGEALYDHWRW 243


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 336 ASLLFVLPSSPMVVRSGSLSVRNVRAATPDPRLQLRSSTSASSDPKYS 193
           A+ +FV+P     ++    S  N  A+ P+P    +S  S+SS  K+S
Sbjct: 164 ANNVFVIPPYLTAMKGFEKSQTNATASVPEPSFLKKSKESSSSSNKFS 211


>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 363 GTFLPDSRVASLLFVLPSSPMVVRSGSLSVRNVRAAT 253
           G   PD + A+++  +PS+ ++ +SG L+V     AT
Sbjct: 43  GRIPPDQKAANIISSVPSTSLLTKSGVLTVTAAALAT 79


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -2

Query: 348 DSRVASLLFVLPSSPMVVRSGSLSVRNVRAATPDPRLQLRSSTSASSDPKY 196
           D ++ ++L V P+S  +   GS       A TPD  + L  + +A + P+Y
Sbjct: 187 DLKIENVLLVAPNSYKLCDFGSACEPLAPATTPDTIMFLEQNIAAYTTPQY 237


>SPAC31G5.18c |||ubiquitin family, human C1ORF55
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -2

Query: 279 SVRNVRAATPDPRLQLRSSTSASSDPKYSSQGCTFQPGK 163
           SV NVR A  +  L  R STSASS    S+   T +P +
Sbjct: 176 SVSNVRDAFQNSLLYRRGSTSASSFSSGSNGATTDEPAE 214


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 373 IWHVISQPRILLLCLAASIRHCGGMCFAYNADLYYRDYFPDV 498
           +W      +I LL      + C  +CFA + ++ + D F DV
Sbjct: 88  LWDSTQPDKIELLYQKNIPKRCADLCFAGSNEIVFGDKFGDV 129


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -3

Query: 266 SGQRHQTHDSSSVVAQAPVQTPNIQVRDVPSNRESYTVSPINTP 135
           S   + TH S   V  +   TPN  V + PS+    + SP N+P
Sbjct: 228 SSNYNTTHTSGGGV-HSGAATPNAYVNNNPSSSRRESESPANSP 270


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 393 LGDDVPDCDCGTFLPDSRVASLLFVLPSS 307
           +GD+ PD D   +  D +  S+L  LP++
Sbjct: 447 IGDEDPDVDAAVYRGDQQDDSILLSLPAA 475


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 17/74 (22%), Positives = 32/74 (43%)
 Frame = -2

Query: 243 RLQLRSSTSASSDPKYSSQGCTFQPGKLYRIPHKYPS*RWTKPRLSDAPRTDLSGFLSPR 64
           R+  R+S+SASS  +  ++         YR+  ++P       +L +    ++     P+
Sbjct: 292 RVSARASSSASSSSRTQAKSIPSHERTHYRLIRQHPELEHVWEKLEEEAPREVKQIEQPK 351

Query: 63  DCSLIPLPL*PYGV 22
           +  L  LP    GV
Sbjct: 352 ELVLNLLPFQREGV 365


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 707 CEGQCDHSPKRAEDDGPERR*GSYQLGQSEHKHSGPNPHFRYVFVRYNS 561
           C+G   H  K AE DG  RR  +  L + + ++   N  F+   + YNS
Sbjct: 23  CQGAFRHQFKTAEQDGFARR--NRDLAKFQKENLNWNGLFQLNSISYNS 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,138,175
Number of Sequences: 5004
Number of extensions: 66821
Number of successful extensions: 212
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)