Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0243
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0566 + 26273708-26273805,26274855-26274983,26275581-262756... 35 0.077
09_06_0081 + 20745627-20748144,20748211-20748308 31 0.95
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485... 30 1.7
01_06_1506 + 37830468-37830600,37830703-37830920,37832078-378325... 30 1.7
09_03_0154 + 12831120-12831222,12831761-12831858,12832019-128321... 29 2.9
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 29 2.9
03_02_1025 + 13289146-13289586,13291882-13292087,13292174-132923... 29 3.8
01_06_1505 + 37827495-37827977,37828424-37828914,37828997-37829819 29 5.1
01_06_0791 - 32026086-32026944,32027044-32027600,32027686-320279... 29 5.1
04_03_0664 + 18501248-18502802,18503370-18505054 28 6.7
12_02_0161 + 14659338-14659467,14659553-14659888,14660034-146602... 28 8.8
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315 28 8.8
03_01_0591 - 4366400-4366558,4366782-4366985,4367078-4367152,436... 28 8.8
>04_04_0566 +
26273708-26273805,26274855-26274983,26275581-26275685,
26275794-26275869,26276437-26276511,26276638-26276740,
26276879-26277008,26277266-26277363,26277920-26277996,
26278262-26278375,26278984-26279103,26279533-26279661,
26279946-26280024,26280757-26280875
Length = 483
Score = 34.7 bits (76), Expect = 0.077
Identities = 18/77 (23%), Positives = 36/77 (46%)
Frame = +3
Query: 3 EYWHLVVLRMVIEAGESGCNPLATGILTDLFAEHQRALVLSIFNWGIYGGYGIAFPVGRY 182
++W + + RM++ GE+ LA + D Q+ L++F I G + + G
Sbjct: 102 DFWSITICRMLVGVGEASFISLAAPFIDDNAPAAQKTAWLAMFYMCIPTGIAVGYVYGGL 161
Query: 183 IPDLNIWGLNWRLCYYG 233
+ + L+WR ++G
Sbjct: 162 VGN----SLHWRAAFWG 174
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 31.1 bits (67), Expect = 0.95
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = -2
Query: 351 PDSRVA-SLLFVLPSSPMVVRSGSLSVRNVRAATPDPRLQLRSSTSASSDPKYSSQGCTF 175
PDS + S + +PS+P+ +R+ + +R +R + P PR ++SA + P + +G T
Sbjct: 555 PDSASSPSTVPRMPSAPLALRALAPHLRALRVSVPHPR-----ASSAPAPPVAAPRGWTV 609
Query: 174 QPGKL-YRIPHKYPS*RWTKPRLSDAP 97
P Y S PR S AP
Sbjct: 610 SPTTARYSFSDSGASSSSAAPRASTAP 636
>07_01_0646 +
4853546-4853623,4853732-4855357,4855467-4855751,
4856131-4856277
Length = 711
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 57 CNPLATGILTDLFAEHQRALVLSIFNWGIYGGYG 158
C PL TG++ +L AEH+ VL G GG+G
Sbjct: 615 CKPLDTGLIRELAAEHE---VLVTVEEGSIGGFG 645
>01_06_1506 +
37830468-37830600,37830703-37830920,37832078-37832529,
37832595-37833402,37834986-37835073,37835196-37835299,
37835402-37835483,37836670-37836923
Length = 712
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Frame = +3
Query: 33 VIEAGESGCNPLATGILTDLFAEH---QRALVLSIFNWGIYGGYG---IAFPVGRYIPDL 194
V+ + G P A + D F E+ + A S FNW + YG + P+ Y+ +
Sbjct: 152 VVAFAQGGHKPCAQALGADQFDENDPGELASRSSFFNWWFFASYGGNTVTVPILNYVQES 211
Query: 195 NIWGLNWRL 221
W L + +
Sbjct: 212 VSWQLGFAI 220
>09_03_0154 +
12831120-12831222,12831761-12831858,12832019-12832195,
12832307-12832407,12832503-12832578,12832665-12832724,
12832810-12832994,12833078-12833174,12833279-12833365,
12833453-12833511,12833617-12833708,12833821-12833898,
12834000-12834160,12834267-12834485
Length = 530
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +3
Query: 588 KMGIRSRVLVLALSQLIATLPSFGSVVFGPLWAMITLAFAYFFA 719
++G+ +L++A SQ + + FG +FG + T++ + +A
Sbjct: 191 EIGLPELILLVAFSQYLPQVLHFGKPIFGRFGVLFTVSIVWLYA 234
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 623 SEHKHSGPN-PHFRYVFVRYNSAGDN 549
S H+H G P F+Y FVR +AGD+
Sbjct: 71 SRHRHHGCRCPGFQYAFVREKAAGDH 96
>03_02_1025 +
13289146-13289586,13291882-13292087,13292174-13292323,
13292412-13292545,13292843-13292949,13293031-13293137,
13293581-13293686,13294098-13294217,13294318-13294474,
13295163-13295254,13295338-13295582,13295668-13296268,
13296362-13296457,13296541-13296794,13297622-13297715,
13299138-13299188
Length = 986
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +1
Query: 397 RILLLCLAASIRHCGGMCF-AYN-ADLYYRDYFPDVDL 504
++L LCL + HC G CF ++ D+YY +Y+ +D+
Sbjct: 682 QMLALCLERA--HCSGKCFGGFDIRDVYYIEYYQLIDI 717
>01_06_1505 + 37827495-37827977,37828424-37828914,37828997-37829819
Length = 598
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Frame = +3
Query: 33 VIEAGESGCNPLATGILTDLFAEH---QRALVLSIFNW---GIYGGYGIAFPVGRYIPDL 194
++ + G P D F E+ + A S FNW GIYGG I + YI D
Sbjct: 205 IVAFAQGGHKPCVQAFGADQFDENDPEECASRSSFFNWWYFGIYGGNVITVSILNYIQDN 264
Query: 195 NIWGLNW 215
W L +
Sbjct: 265 IGWQLGF 271
>01_06_0791 -
32026086-32026944,32027044-32027600,32027686-32027903,
32028171-32028261
Length = 574
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +3
Query: 36 IEAGESGCNPLATGILTDLFAEH---QRALVLSIFNWGIYGGYGIAFPV 173
+ G G P + D F+ H +R+ +L ++ YG G+AF V
Sbjct: 149 LSVGAGGVRPCSMAFGADQFSRHPKERRSRILQVYFNAYYGSIGVAFMV 197
>04_03_0664 + 18501248-18502802,18503370-18505054
Length = 1079
Score = 28.3 bits (60), Expect = 6.7
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = +2
Query: 485 TSPTSISAVAVRCHGRHWIRWCCRRRNYIGQIRSENGD*VPSACARFVPADSYLTFVRVR 664
TS T+++ + RC W+ C IG + + + +PS A +S L F RV
Sbjct: 960 TSVTNMTINSCRCLPEEWLMQNCNNLQRIGVRDASHLEFLPSIMASLTSLES-LEFTRVM 1018
Query: 665 RLR--PALGYDHTGLRIFLCRDVV 730
++ P L L+I C V+
Sbjct: 1019 LIQSLPELPSSLRRLQILGCNPVL 1042
>12_02_0161 +
14659338-14659467,14659553-14659888,14660034-14660266,
14660344-14660805,14660887-14661719,14661802-14661972,
14662052-14662352
Length = 821
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = -3
Query: 722 LGKEICEGQCDHSPKRAEDDGPERR*GSYQ-LGQSEHKHSGPNPHFRYVFVRYNSAGDNT 546
+ ++ + + D +PKR EDD + G+ + LG++ + G + H+++ +Y+S
Sbjct: 237 VAEQASQSEVDSAPKRHEDDILTKALGTNEHLGRT--RGIGSDVHWKHGLPQYSSQYSKR 294
Query: 545 NGSNADRDS 519
S +RD+
Sbjct: 295 KVSKEERDA 303
>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
Length = 678
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -2
Query: 321 VLPSSPMVVRSGSLSVRNVRAATPDPRLQLRSSTSASSDPKYSSQGCT 178
+LP SP + SLS A +PD RS++ S+ P SS CT
Sbjct: 609 LLPGSPSA--TSSLSSSPSPAPSPDSATASRSASPTSARPATSSWTCT 654
>03_01_0591 -
4366400-4366558,4366782-4366985,4367078-4367152,
4367240-4367394,4367476-4367596,4367720-4367794,
4369435-4369572,4369655-4369765,4369844-4369948,
4370327-4370405,4370561-4370622,4370698-4370763,
4370840-4371024,4371095-4371173
Length = 537
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 330 TTQLWSLVKTCRSHNLARHLPA 395
TTQ+WS VK CR H PA
Sbjct: 500 TTQVWSFVKGCRDMAREMHDPA 521
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,719,854
Number of Sequences: 37544
Number of extensions: 501658
Number of successful extensions: 1580
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1579
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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