Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0243
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)              84   1e-16
SB_57163| Best HMM Match : 3HCDH_N (HMM E-Value=2.4)                   32   0.55 
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)            31   0.97 
SB_21904| Best HMM Match : Vinculin (HMM E-Value=0)                    29   3.0  
SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7)                    29   5.2  
SB_22966| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_1619| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.2  
SB_55538| Best HMM Match : zf-BED (HMM E-Value=1.4)                    28   6.8  
SB_18233| Best HMM Match : CBM_14 (HMM E-Value=2.9)                    28   6.8  
SB_13852| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_3731| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.8  
SB_32515| Best HMM Match : FAINT (HMM E-Value=4.5)                     28   9.0  
SB_24909| Best HMM Match : Mab-21 (HMM E-Value=3.4e-06)                28   9.0  
SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08)               28   9.0  
SB_3180| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.0  

>SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 32/75 (42%), Positives = 46/75 (61%)
 Frame = +3

Query: 6   YWHLVVLRMVIEAGESGCNPLATGILTDLFAEHQRALVLSIFNWGIYGGYGIAFPVGRYI 185
           YWHL+V R ++  GE+GC P AT ++ D F E  R   L ++NWGIY GY +++  G YI
Sbjct: 162 YWHLLVTRFILGIGEAGCTPFATSLIADYFPESLRGTALGVYNWGIYLGYSMSYAFGNYI 221

Query: 186 PDLNIWGLNWRLCYY 230
              +I G  WR  ++
Sbjct: 222 TKADIGGKGWRWVFW 236



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 19/51 (37%), Positives = 30/51 (58%)
 Frame = +1

Query: 355 KRAAVTIWHVISQPRILLLCLAASIRHCGGMCFAYNADLYYRDYFPDVDLG 507
           K   V +     +P +L+L LA +IR+ GG  +AYN   Y+  Y+P+ D+G
Sbjct: 305 KLKLVLMLKTFRRPTLLILFLAGAIRNAGGYVWAYNTQPYFNKYYPETDVG 355



 Score = 35.5 bits (78), Expect = 0.045
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +3

Query: 573 DKYVAKMGIRSRVLVLALSQLIATLPSFGSVVFGPLWAMITLAFAYFFAEMWFG 734
           D+ V   G  +R+ VL  SQ+IA   + G++     WA I+L  +    EMW G
Sbjct: 378 DRLVKDRGPHARIWVLVGSQIIAAPFAAGALFLPTPWAFISLLPSNIIGEMWVG 431


>SB_57163| Best HMM Match : 3HCDH_N (HMM E-Value=2.4)
          Length = 303

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 446 CASPTMPICTTVTTSPTSIS-AVAVRCHGRHWIRWCCRRRN 565
           C  PT   C       T  S AV  R +G+ W RW CRRRN
Sbjct: 204 CKVPTCYRCRNGKRGATGASRAVYRRRNGKRW-RWVCRRRN 243


>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
          Length = 797

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
 Frame = -2

Query: 336 ASLLFVLPSSPMVVRSG-SLSVRNVRAATPDPRLQLRSSTS---ASSDPKYSSQGCTFQP 169
           +SLL VL S  + +  G S +    R+     RL ++S  +   A+S P+  +   T  P
Sbjct: 23  SSLLLVLLSGVVTLNPGPSDNSAFARSFLSSGRLGIKSPRTPFPANSPPRVINSPRTPLP 82

Query: 168 GKLYRIPHKYPS*R---WTKPRLSDAPRTDLSGFLSPR 64
               R  H+ P  +   +T PR+  +PR  L  + +PR
Sbjct: 83  ANSTRRVHQSPRNKLPAYTSPRVHQSPRNKLPAYTTPR 120



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = -2

Query: 255 TPDPRLQLRSSTSASSDPKYSSQGCTFQPGKLY-RIPH--KYPS*RWTKPRLSDAPRTDL 85
           TP P    R++  A++ P+      T  P     R+ H  + P   +T PR+  +PRT L
Sbjct: 630 TPLPAYSPRTTLPANTTPRVHHSPRTPLPAYTSPRVRHSPRTPVPAYTSPRVHQSPRTSL 689

Query: 84  SGFLSPR 64
             + +PR
Sbjct: 690 PAYSTPR 696



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -2

Query: 234 LRSSTSASSDPKYSSQGCTFQPGKLY-RIPH--KYPS*RWTKPRLSDAPRTDLSGFLSPR 64
           LR+   A + P+     CT  P     R+ H  + P   +T PR   +PRT L  + SPR
Sbjct: 459 LRTPLPAYTSPREHQSPCTPVPAYTTPRVLHSPRTPLPTYTSPREHHSPRTPLPTYTSPR 518



 Score = 28.3 bits (60), Expect = 6.8
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
 Frame = -2

Query: 279 SVRNVRAATPDPRL--QLRSSTSASSDPKYSSQGCTFQPGKLYRIPHKYPS*RWTKPRLS 106
           S RN   A   PR+    R    A   P+     CT  P  L+  P    +  +T PR+ 
Sbjct: 108 SPRNKLPAYTTPRVLHSPRHPLPAYFTPRVLHSPCTPVPAVLHS-PRTSLA-VYTSPRVH 165

Query: 105 DAPRTDLSGFLSPRDCSLIPLPL*PY 28
           ++PRT    + SPR+      PL  Y
Sbjct: 166 NSPRTPFLAYTSPREHQSPRTPLPAY 191


>SB_21904| Best HMM Match : Vinculin (HMM E-Value=0)
          Length = 999

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -2

Query: 339 VASLLFVLPSSPMVVRSGSLSVRNVRAATPDPRLQLRSSTSASSDPK 199
           VA+L   + ++P  V+   ++ R++RA  P PR+   S  S SS  K
Sbjct: 441 VATLACSMSNNPEKVKMVRIAARHIRALAPQPRIIEYSVGSVSSTAK 487


>SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7)
          Length = 383

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +3

Query: 606 RVLVLALSQLIATLPSFGSVVFGPLWAMITLAF 704
           R LVLA SQ++  LP FG+ VF P +A+  + F
Sbjct: 94  RHLVLARSQVLRFLPFFGA-VFAPPYALSFVCF 125


>SB_22966| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +2

Query: 182 HP*LEYLGSELALVLLRSWSRGSGVAALTFLTLKEPERTTIGEEGNTKSNDATLES 349
           H   E +G +++LVL    S GS V++    +  +P +       N   ND+ + +
Sbjct: 204 HKWQENIGKKMSLVLFLQTSSGSVVSSCDTSSFSQPFQVNNNSSSNNNDNDSNINN 259


>SB_1619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 667

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 1/104 (0%)
 Frame = +2

Query: 425 RSDIVVVCASPTMPICTTVTTSPTSISAVAVRCHGRHWIRWCCRRRNYIGQIRSENGD*V 604
           +S     C S     C     S    + + + CHG H +R    R   +   R+      
Sbjct: 204 KSRSTTYCISWNRESCVAPNPSACRFTHLCLTCHGNHQVRHYPNRPTGLLSHRNRPRSPP 263

Query: 605 PSACARFVPADSYLTFVRVRRLRPALGYDHTGLRI-FLCRDVVR 733
           P+A  RF P  S +T +   R    L  DH   +I F   D +R
Sbjct: 264 PAAPKRFKPILSSVTPLNPNRFVWEL-RDHPDKKITFFVIDGIR 306


>SB_55538| Best HMM Match : zf-BED (HMM E-Value=1.4)
          Length = 1108

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 357 TCRSHNLARHLPAQ-DTAPLLSCFDQTLWWYVLRLQC 464
           TCR+  L   +PA+ D+  +L C DQT W  ++  +C
Sbjct: 180 TCRNVFLLGFIPAKADSVVVLLCRDQTQWQPLINDRC 216


>SB_18233| Best HMM Match : CBM_14 (HMM E-Value=2.9)
          Length = 235

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +2

Query: 197 YLGSELALVLLRSWSRGSGVAALT---FLTLKEPERTTIGEEGNTKSNDAT 340
           Y   +L +V L + + G G   L    F+ LKE E +T+ E G TKS+  T
Sbjct: 22  YKAQKLRVVSLNNNAVGLGDKKLYQSYFVCLKESEESTLVEYGKTKSSSRT 72


>SB_13852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 846

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 730 NHISAKKYAKASVIIAQSGPKTTDPNEGKVAISWDKASTS 611
           +HIS+       V    SG  TT PN  K  I W+ + +S
Sbjct: 596 SHISSSSVVTQKVQKGPSGKVTTSPNGIKFEIPWETSKSS 635


>SB_3731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 410

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 215 PVQTPNIQVRDVPSNRESYTVSPI-NTPVE 129
           P   P ++V DVP +RES    P+ N PVE
Sbjct: 345 PNHKPYLRVIDVPDHRESSICKPVLNLPVE 374


>SB_32515| Best HMM Match : FAINT (HMM E-Value=4.5)
          Length = 103

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
 Frame = +3

Query: 21  VLRMVIEAGESGCNPLATG-----ILTDLFAEHQRALVLSIFNWGIYGGYGIAFPVGRYI 185
           V  +++EA + G NP  T      +L D   ++      +++++ +     +A  VG+  
Sbjct: 25  VYSLLVEAADHG-NPTMTSSATVHVLVDDINDNSPIFSKTVYSFTVKEDAQLAHTVGKVT 83

Query: 186 PDLNIWGLNWRLCY 227
            +   WG+N RL Y
Sbjct: 84  AEDKDWGINARLSY 97


>SB_24909| Best HMM Match : Mab-21 (HMM E-Value=3.4e-06)
          Length = 702

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 138 GIYGGYGIAFPVGRYIP 188
           G+YGG+G AFP   Y P
Sbjct: 66  GLYGGFGPAFPFAGYSP 82


>SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08)
          Length = 271

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 297 VRSGSLSVRNVRAATPDPRLQLRSSTSASSDPKYSSQG 184
           V +GS S R + A   D     R+S   +  P YSSQG
Sbjct: 152 VHTGSPSSRQIFAGAMDSTHSFRASDMMAGRPVYSSQG 189


>SB_3180| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 590 FRYVFVRYNSAGDNTNGSNADRDSEQPQPRST 495
           ++Y  V ++   DN  G    R S  PQP+ T
Sbjct: 216 YKYAKVNFSCVFDNVTGVEPPRQSSTPQPKIT 247


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,433,621
Number of Sequences: 59808
Number of extensions: 540879
Number of successful extensions: 1830
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1823
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)