Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0243
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70307-11|CAA94337.1|  488|Caenorhabditis elegans Hypothetical p...    42   3e-04
Z92825-3|CAB07311.1|  531|Caenorhabditis elegans Hypothetical pr...    36   0.030
AL132904-15|CAC35848.2|  518|Caenorhabditis elegans Hypothetical...    36   0.030
Z92826-6|CAM06583.1|  111|Caenorhabditis elegans Hypothetical pr...    31   0.85 
AL023844-11|CAA19525.3|  489|Caenorhabditis elegans Hypothetical...    30   2.0  
Z81098-2|CAB03182.1|  961|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U00045-3|AAL02502.1|  868|Caenorhabditis elegans Temporarily ass...    28   6.0  
U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily ass...    28   6.0  
U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily ass...    28   6.0  
AL110490-7|CAD59175.1|  533|Caenorhabditis elegans Hypothetical ...    28   6.0  
AL110490-6|CAB54442.2|  687|Caenorhabditis elegans Hypothetical ...    28   6.0  
AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z70307-11|CAA94337.1|  488|Caenorhabditis elegans Hypothetical
           protein C39E9.10 protein.
          Length = 488

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
 Frame = +3

Query: 6   YWHLVVLRMVIEAGESGCNPLATGILTDLFAEHQRALVLSIFNWGIYGGYGIAFPVGRYI 185
           +W  +VLR  +  GE+  + +A  +++D+F   +R+ V  IF + I  G G+ F VG  +
Sbjct: 99  FWLFLVLRSFVGIGEASYSNVAPSLISDMFNGQKRSTVFMIFYFAIPVGSGLGFIVGSNV 158

Query: 186 PDLN---IWGL 209
             L     WG+
Sbjct: 159 ATLTGHWQWGI 169


>Z92825-3|CAB07311.1|  531|Caenorhabditis elegans Hypothetical
           protein C13C4.5 protein.
          Length = 531

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 17/72 (23%), Positives = 37/72 (51%)
 Frame = +3

Query: 3   EYWHLVVLRMVIEAGESGCNPLATGILTDLFAEHQRALVLSIFNWGIYGGYGIAFPVGRY 182
           ++W  ++ R ++  GE+    ++  ++ D+F    R+ +L +F + I  G G+ F VG  
Sbjct: 146 QFWLFLLFRGIVGIGEASYAIISPTVIADMFTGVLRSRMLMVFYFAIPFGCGLGFVVGSA 205

Query: 183 IPDLNIWGLNWR 218
           +     W  +W+
Sbjct: 206 VAS---WTGHWQ 214


>AL132904-15|CAC35848.2|  518|Caenorhabditis elegans Hypothetical
           protein Y111B2A.19 protein.
          Length = 518

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 19/60 (31%), Positives = 34/60 (56%)
 Frame = +3

Query: 6   YWHLVVLRMVIEAGESGCNPLATGILTDLFAEHQRALVLSIFNWGIYGGYGIAFPVGRYI 185
           Y+  ++ R ++  GE+  + +A  +L+DLF+   R+ VL +F + I  G G+ F  G  I
Sbjct: 114 YYLFLLCRGIVGIGEASYSTIAPTVLSDLFSGGLRSRVLMMFYFAIPVGSGLGFISGSSI 173


>Z92826-6|CAM06583.1|  111|Caenorhabditis elegans Hypothetical
           protein C18D11.9 protein.
          Length = 111

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 135 WGIYGGYGIA-FPVGRYIPDLNIWGLNWRLCYYG 233
           WG YGG+G   +  G + P    WG  WR  YYG
Sbjct: 57  WGYYGGWGYRPYGWGYHRP----WGWGWRRPYYG 86


>AL023844-11|CAA19525.3|  489|Caenorhabditis elegans Hypothetical
           protein Y48A6B.10 protein.
          Length = 489

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 222 TSASSDPKYSSQGCTFQPGKLY-RIPHKYPS*RWTKPRLSDAPR 94
           T+  S P YS+  C    G+L   +P KYPS     PR   AP+
Sbjct: 261 TNPLSAPNYSTFQCLTPNGRLLPAVPRKYPSQSEPPPRSRPAPQ 304


>Z81098-2|CAB03182.1|  961|Caenorhabditis elegans Hypothetical protein
            K07A12.2 protein.
          Length = 961

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 296  YVQAP*A*GTSGQRHQTHDSSSVVAQAPVQTPNIQVRDVPSNR 168
            Y  +P + G+SGQ        S  A +P++ P + +   P+NR
Sbjct: 891  YRSSPSSSGSSGQNAANESGRSSAAPSPIRPPLMNIPKTPNNR 933


>U00045-3|AAL02502.1|  868|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 204, isoform b protein.
          Length = 868

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -2

Query: 294 RSGSLSVRNVRAATPDPRLQLRSSTSASSDPKYSSQGCTFQPGKLY 157
           R G   V  +RA  P P L  + STS+S+   Y      F   K +
Sbjct: 441 RVGEADVLILRAPVPAPMLSKQMSTSSSNSSNYDKARSVFTENKSF 486


>U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 204, isoform a protein.
          Length = 1004

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -2

Query: 294 RSGSLSVRNVRAATPDPRLQLRSSTSASSDPKYSSQGCTFQPGKLY 157
           R G   V  +RA  P P L  + STS+S+   Y      F   K +
Sbjct: 396 RVGEADVLILRAPVPAPMLSKQMSTSSSNSSNYDKARSVFTENKSF 441


>U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 204, isoform c protein.
          Length = 1099

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -2

Query: 294 RSGSLSVRNVRAATPDPRLQLRSSTSASSDPKYSSQGCTFQPGKLY 157
           R G   V  +RA  P P L  + STS+S+   Y      F   K +
Sbjct: 491 RVGEADVLILRAPVPAPMLSKQMSTSSSNSSNYDKARSVFTENKSF 536


>AL110490-7|CAD59175.1|  533|Caenorhabditis elegans Hypothetical
           protein Y48B6A.6b protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 25/78 (32%), Positives = 33/78 (42%)
 Frame = -1

Query: 274 EERQGSDTRPTTPAP**HKRQFRPQIFKSGMYLPTGKAIPYPP*IPQLKMDKTKAL*CSA 95
           E ++ SD RP+ P P        P   K    L   +A P P   PQL ++      CS 
Sbjct: 383 EAQEASDDRPSAPTPIRDSSLPPPPPPKPETPLAIRRAGPIP--TPQL-LEMIHQEDCSI 439

Query: 94  NRSVRIPVAKGLQPDSPA 41
             S    V+ G +P SPA
Sbjct: 440 RPSSPTSVSHGSRPQSPA 457


>AL110490-6|CAB54442.2|  687|Caenorhabditis elegans Hypothetical
           protein Y48B6A.6a protein.
          Length = 687

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 25/78 (32%), Positives = 33/78 (42%)
 Frame = -1

Query: 274 EERQGSDTRPTTPAP**HKRQFRPQIFKSGMYLPTGKAIPYPP*IPQLKMDKTKAL*CSA 95
           E ++ SD RP+ P P        P   K    L   +A P P   PQL ++      CS 
Sbjct: 383 EAQEASDDRPSAPTPIRDSSLPPPPPPKPETPLAIRRAGPIP--TPQL-LEMIHQEDCSI 439

Query: 94  NRSVRIPVAKGLQPDSPA 41
             S    V+ G +P SPA
Sbjct: 440 RPSSPTSVSHGSRPQSPA 457


>AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical
           protein Y51A2D.5 protein.
          Length = 613

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = +1

Query: 355 KRAAVTIWHVISQPRILLLCLAASIRHCGGMCFAYNADLYY 477
           K++   IW ++  P +L  C   S+          N  LYY
Sbjct: 262 KKSGPVIWRILKTPHVLKACFIGSMLQAFQQLAGINTILYY 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,621,988
Number of Sequences: 27780
Number of extensions: 391409
Number of successful extensions: 1234
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)