Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0243
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.74 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.74 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   1.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   1.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   2.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   6.9  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.1  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 255 TPDPRLQLRSSTSASSDPKYSSQGCTFQPGK 163
           +P+PR+    S+S SS P         QP K
Sbjct: 512 SPNPRIASAPSSSTSSSPPAKGAAAAGQPSK 542


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 579 YVAKMGIRSRVLVLALSQLIATLPSFGSVVFGPLWAMITLA 701
           ++  + +   ++ LA+    AT   F   +FG LW  I LA
Sbjct: 103 FIVSLAVADLMVGLAVLPFSATWEVFKVWIFGDLWCSIWLA 143


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 101 ASESLGFVHLQLGYLWGIRYSFPGWKVHP 187
           A ++L F+  + GY+  +R  F GW V P
Sbjct: 9   AGKALAFI-AEEGYVPSMREKFLGWNVPP 36


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 101 ASESLGFVHLQLGYLWGIRYSFPGWKVHP 187
           A ++L F+  + GY+  +R  F GW V P
Sbjct: 9   AGKALAFI-AEEGYVPSMREKFLGWNVPP 36


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 581 VFVRYNSAGDNTNGSNADRDSEQPQPRSTSG 489
           +  R  +A D TN      DS+ P P   SG
Sbjct: 643 IMPRVQNATDTTNFDEYPPDSDPPPPDDISG 673


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 13/58 (22%), Positives = 23/58 (39%)
 Frame = -3

Query: 260  QRHQTHDSSSVVAQAPVQTPNIQVRDVPSNRESYTVSPINTPVEDGQNQGSLMLREQI 87
            Q  QT     ++AQ   +   +Q++  P  ++      I   V    N G L+  E +
Sbjct: 1075 QSIQTSGMQRIIAQIGGKPIAVQIQQSPHQQQQQQQQKILAKVLTSSNSGQLISVENL 1132


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 212 VQTPNIQ-VRDVPSNRESYTVSPINTPVED 126
           VQT +I    + P  ++SYTV+ +   +ED
Sbjct: 429 VQTDSIIFANNQPYTKDSYTVAGMGETIED 458


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 315 PSSPMVVRSGSLSVRN 268
           PS+P + R+G  SVR+
Sbjct: 335 PSNPSITRTGLSSVRD 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,007
Number of Sequences: 438
Number of extensions: 5222
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)