Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0243
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22730.1 68415.m02694 transporter-related low similarity to s...    38   0.007
At5g64500.1 68418.m08103 membrane protein-related contains weak ...    37   0.016
At5g65687.1 68418.m08267 transporter-related low similarity to s...    33   0.20 
At3g02125.1 68416.m00179 hypothetical protein                          29   2.4  
At1g62050.1 68414.m06999 ankyrin repeat protein-related contains...    29   3.2  
At1g70110.1 68414.m08068 lectin protein kinase family protein co...    29   4.2  
At4g15730.1 68417.m02394 expressed protein                             27   9.8  
At2g25430.1 68415.m03046 epsin N-terminal homology (ENTH) domain...    27   9.8  
At1g61770.1 68414.m06966 DNAJ heat shock N-terminal domain-conta...    27   9.8  

>At2g22730.1 68415.m02694 transporter-related low similarity to
           spinster membrane proteins from [Drosophila
           melanogaster] GI:12003974, GI:12003976, GI:12003972,
           GI:12003970; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 510

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 20/76 (26%), Positives = 35/76 (46%)
 Frame = +3

Query: 6   YWHLVVLRMVIEAGESGCNPLATGILTDLFAEHQRALVLSIFNWGIYGGYGIAFPVGRYI 185
           +W +V+ RM +  GE+    LA   + D   + Q+A  L +F   I  G  + +  G Y+
Sbjct: 150 FWFIVLCRMFVGVGEASFISLAAPFIDDNAPQEQKAAWLGLFYMCIPSGVALGYVYGGYV 209

Query: 186 PDLNIWGLNWRLCYYG 233
                   +WR  ++G
Sbjct: 210 GK----HFSWRYAFWG 221


>At5g64500.1 68418.m08103 membrane protein-related contains weak
           similarity to spinster type IV (GI:12003976) [Drosophila
           melanogaster]
          Length = 484

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 19/77 (24%), Positives = 35/77 (45%)
 Frame = +3

Query: 3   EYWHLVVLRMVIEAGESGCNPLATGILTDLFAEHQRALVLSIFNWGIYGGYGIAFPVGRY 182
           ++W + + RM +  GE+    LA   + D     Q++  L++F   I  GY   +  G  
Sbjct: 141 DFWSITICRMFVGVGEASFVSLAAPFIDDNAPHDQKSAWLAVFYMCIPTGYAFGYVYGGV 200

Query: 183 IPDLNIWGLNWRLCYYG 233
           +  +    L WR  ++G
Sbjct: 201 VGSV----LPWRAAFWG 213


>At5g65687.1 68418.m08267 transporter-related low similarity to
           spinster membrane proteins from [Drosophila
           melanogaster] GI:12003976,  GI:12003972, GI:12003974,
           GI:12003970; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 492

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = +3

Query: 6   YWHLVVLRMVIEAGESGCNPLATGILTDLFAEHQRALVLSIFNWGIYGGYGIAFPVGRYI 185
           +W + V RM +  GE+    LA   + D     ++   L +F   I  G  + +  G YI
Sbjct: 133 FWMIAVFRMFVGVGEASFISLAAPYIDDSAPVARKNFWLGLFYMCIPAGVALGYVFGGYI 192

Query: 186 PDLNIWGLNWRLCYY 230
            +     L WR  +Y
Sbjct: 193 GN----HLGWRWAFY 203


>At3g02125.1 68416.m00179 hypothetical protein
          Length = 355

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 254 HQTHDSSSVVAQAPVQTPNIQVRDVPSNRESYTVSPINTPVEDGQNQ 114
           H   + +SV    PV+ PN   ++  + +E Y V   N+ +ED + +
Sbjct: 144 HVITEINSVPLPPPVKKPNEYEKETIAEKEPYQVENSNSDIEDNEEE 190


>At1g62050.1 68414.m06999 ankyrin repeat protein-related contains
           weak hit to Pfam profile PF00023: Ankyrin repeat
          Length = 497

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 24/75 (32%), Positives = 29/75 (38%)
 Frame = -2

Query: 288 GSLSVRNVRAATPDPRLQLRSSTSASSDPKYSSQGCTFQPGKLYRIPHKYPS*RWTKPRL 109
           G L   N     P PR Q R S+    D  + S G         +    YPS     PR 
Sbjct: 209 GFLVAENPSFLAPPPRSQRRHSSFVKEDRDWISVG--------RKSVDVYPSAAPPPPRQ 260

Query: 108 SDAPRTDLSGFLSPR 64
           S +PR  +S F  PR
Sbjct: 261 SQSPRRSVSQFQPPR 275


>At1g70110.1 68414.m08068 lectin protein kinase family protein
           contains Pfam domains, PF00138: Legume lectins alpha
           domain, PF00139: Legume lectins beta domain and PF00069:
           Protein kinase domain
          Length = 666

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/20 (70%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = +3

Query: 117 VLSI-FNWGIYGGYGIAFPV 173
           V SI F+ GIYGGYGIAF +
Sbjct: 85  VFSIEFHNGIYGGYGIAFVI 104


>At4g15730.1 68417.m02394 expressed protein
          Length = 1059

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 214 QFRPQIFKSGMYLPTGKAIPYPP 146
           +F P+IF  G +LPT K +P  P
Sbjct: 52  RFGPEIFDYGSFLPTYKRLPAVP 74


>At2g25430.1 68415.m03046 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain;
          Length = 653

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 24/96 (25%), Positives = 42/96 (43%)
 Frame = -3

Query: 422 AAKQRSSILGWEMTCQIVTAARFYQTPELRRCFSYYLLHRWWYVQAP*A*GTSGQRHQTH 243
           AAKQ   ++ +   C+    AR  + PE++R  S  L     +V+     G S +R +  
Sbjct: 330 AAKQIDELIAFYNWCKETGVARSSEYPEVQRITSKLLETLEEFVRDRAKRGKSPERKEIE 389

Query: 242 DSSSVVAQAPVQTPNIQVRDVPSNRESYTVSPINTP 135
               VV +   +    +++ +P   E+YT  P   P
Sbjct: 390 APPPVVEEEEPEPDMNEIKALPP-PENYTPPPPPEP 424


>At1g61770.1 68414.m06966 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9UBS4 DnaJ
           homolog subfamily B member 11 precursor Homo sapiens;
           contains Pfam profile PF00226 DnaJ domain
          Length = 300

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
 Frame = -3

Query: 638 YQLGQSEHKHSGPNPHFRYVFVR----YNSAGDNTNGSNADRDSEQPQ 507
           Y+L    H    P+P  R +FV+    Y    DNT  +  D   E P+
Sbjct: 55  YKLSLQHHPDKNPDPESRKLFVKIATAYEILKDNTTRAQYDYAIEHPE 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,908,646
Number of Sequences: 28952
Number of extensions: 376734
Number of successful extensions: 1120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)