Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0242
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    64   1e-11
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    27   2.5  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   3.3  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    27   3.3  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    26   4.4  
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    26   4.4  

>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 64.5 bits (150), Expect = 1e-11
 Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = +2

Query: 314 THYGAPLINSSL-GDGRLKCPWHGACFNLKTGDIEDFPGFDSLPCYQVTVTDKGEVKVRA 490
           +HYGAPL    +  DG + CPWHGACFN  TGD+ED P   +L  + VT    G + +  
Sbjct: 62  SHYGAPLAKGVVTSDGHIVCPWHGACFNAATGDVEDTPAIAALRTFPVTEEGDGSLWIEV 121

Query: 491 K 493
           +
Sbjct: 122 E 122



 Score = 34.7 bits (76), Expect = 0.012
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 592 ATCAESLRSEGFKGRITVIAKEPHLPYD 675
           +  AE LR + FKG+IT+  +E  +PYD
Sbjct: 170 SVAAEYLREKNFKGKITIFTREDEVPYD 197


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1018

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +2

Query: 281  RENSPLSERSSTHYGAPLINSSLGDGRLKCPWHGACFNLKTGDIEDFPGFDSL 439
            + N P  E++S H  A   NSS+ +   K P       LKT     FPG+ SL
Sbjct: 865  QSNKPFIEKASMHAPAKGRNSSMQEPSSKSPL------LKTPKSNYFPGYGSL 911


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 559 RNLHKERPHPYPLYACSFEVTYLCSYLYFSFIG 461
           R  H      Y L + SF ++YL + +YF F+G
Sbjct: 740 RRHHVREVSAYGLDSYSFNMSYLEAPIYFDFVG 772


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 632 PLNPSLRSDSAHVAPDGLQNTITTTEPSQGETTPI 528
           P   S  S +  + P  LQNT+ + +P++   TPI
Sbjct: 514 PSKSSNLSINIDIPPSPLQNTVISPQPTRRSRTPI 548


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 111 PTVAKVEAAMKTAEPYPEWSLLTITSNQSF 200
           PTV  V  A+ T +P+P+ S + I    +F
Sbjct: 83  PTVTSVVHALATTDPHPDNSKIVILMGSNF 112


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 617 LRSDSAHVAPDGLQNTITTTEPSQGE 540
           LR   +H+ PD ++N + +TE  + E
Sbjct: 14  LRMQYSHILPDSIENRVISTEAPEWE 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,377
Number of Sequences: 5004
Number of extensions: 59612
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)