Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0242
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0971 - 21949721-21949936,21950051-21950484,21950599-219507... 35 0.069
10_08_0973 - 21963754-21963936,21964089-21964383,21964504-219646... 34 0.091
03_06_0369 + 33425251-33425778,33425864-33426051,33426152-334262... 29 2.6
03_06_0373 + 33468711-33468917,33469020-33469217 29 3.4
03_06_0371 + 33435936-33436472,33436554-33436741,33437146-334372... 29 3.4
03_06_0370 + 33431696-33432217,33432521-33432796,33433003-334331... 29 3.4
11_02_0031 - 7559312-7559503,7559732-7559992,7561760-7562140 28 6.0
06_03_0790 - 24636805-24637770 28 6.0
>10_08_0971 -
21949721-21949936,21950051-21950484,21950599-21950791,
21950909-21951007,21951114-21951191,21951275-21951669,
21954317-21954482,21954840-21954927,21955015-21955127,
21955242-21955426,21955840-21955987,21956071-21956349,
21956425-21956529,21956892-21957137,21957367-21957408,
21957539-21957613
Length = 953
Score = 34.7 bits (76), Expect = 0.069
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Frame = +2
Query: 212 DLKDNEMKVFDIGEAGRCL**NRRENSPLSERSSTHYGAPLINSSLGDGRLKCPWHGACF 391
DLKD+ M D E + + + + H PL S+ +GR++CP+HG +
Sbjct: 243 DLKDDTMVPIDCFEEQWVIFRGKDGRPGCVQNTCAHRACPLHLGSVSEGRIQCPFHGWEY 302
Query: 392 NLKTGDIEDFPG-------FDSLPCYQ 451
+ G E P SLPC++
Sbjct: 303 S-TDGKCEKMPATKLLNVRIRSLPCFE 328
>10_08_0973 -
21963754-21963936,21964089-21964383,21964504-21964616,
21964729-21964913,21965054-21965201,21965297-21965575,
21965657-21965761,21965936-21966178,21966426-21966486,
21966734-21966792
Length = 556
Score = 34.3 bits (75), Expect = 0.091
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Frame = +2
Query: 197 VCQENDLKDNEMKVFDIGEAGRCL**NRRENSPLSERSSTHYGAPLINSSLGDGRLKCPW 376
V +DLKD+ M D E + + + H PL S+ +GR++CP+
Sbjct: 238 VAFSSDLKDDTMVPIDCFEEQWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNEGRIQCPY 297
Query: 377 HGACFNLKTGDIEDFPG-------FDSLPCYQ 451
HG ++ G E P SLPC++
Sbjct: 298 HGWEYS-TDGKCEKMPSTKMLNVRIRSLPCFE 328
>03_06_0369 +
33425251-33425778,33425864-33426051,33426152-33426251,
33426366-33426578,33426616-33426822,33426908-33427095,
33427234-33427492
Length = 560
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 308 SSTHYGAPLINSSLGD-GRLKCPWHGACFN 394
S H APL + D GRL+C +HG CF+
Sbjct: 130 SCPHRLAPLSEGRVDDKGRLQCVYHGWCFD 159
>03_06_0373 + 33468711-33468917,33469020-33469217
Length = 134
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 317 HYGAPLINSSL-GDGRLKCPWHGACFN 394
H APL + G GRL+C +HG CF+
Sbjct: 26 HRLAPLSEGRVDGKGRLQCAYHGWCFD 52
>03_06_0371 +
33435936-33436472,33436554-33436741,33437146-33437245,
33437360-33437545,33438977-33439186,33439772-33439959,
33440083-33440341
Length = 555
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 317 HYGAPLINSSL-GDGRLKCPWHGACFN 394
H APL + G GRL+C +HG CF+
Sbjct: 136 HRLAPLSEGRVDGKGRLQCAYHGWCFD 162
>03_06_0370 +
33431696-33432217,33432521-33432796,33433003-33433183,
33433253-33433455,33433545-33433732,33433844-33434105
Length = 543
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 317 HYGAPLINSSL-GDGRLKCPWHGACFN 394
H APL + G GRL+C +HG CF+
Sbjct: 131 HRLAPLSEGRVDGKGRLQCAYHGWCFD 157
>11_02_0031 - 7559312-7559503,7559732-7559992,7561760-7562140
Length = 277
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +2
Query: 320 YGAPLINSSLG-DGRLKCPWHGACFNLKTGDIEDF 421
Y L+N+ L DG + CP + F+L+TG+I+++
Sbjct: 116 YTEGLLNAKLTQDGCIVCPTTDSTFDLRTGEIKEW 150
>06_03_0790 - 24636805-24637770
Length = 321
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 443 CYQVTVTDKGEVKVRAKISDLKRTSV*RIW-VWS 541
C V KGE VR + D+KR + R W VWS
Sbjct: 48 CEDEVVLKKGENAVRGDVDDVKRHTSLRGWGVWS 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,422,995
Number of Sequences: 37544
Number of extensions: 394318
Number of successful extensions: 943
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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