Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0242
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53186| Best HMM Match : Rieske (HMM E-Value=1.2e-20)               107   6e-24
SB_13127| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   2.0  
SB_31707| Best HMM Match : Extensin_2 (HMM E-Value=0.19)               29   4.6  
SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  
SB_21209| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22)                   28   8.0  

>SB_53186| Best HMM Match : Rieske (HMM E-Value=1.2e-20)
          Length = 216

 Score =  107 bits (258), Expect = 6e-24
 Identities = 50/102 (49%), Positives = 69/102 (67%)
 Frame = +2

Query: 185 VESVVCQENDLKDNEMKVFDIGEAGRCL**NRRENSPLSERSSTHYGAPLINSSLGDGRL 364
           VE+VV + +DL+D +MK  ++ E  + L               THYGAPL + +L  GR+
Sbjct: 113 VEAVVAKVSDLQDGQMKTVELAEGKKALLVKENGTFYAVGHKCTHYGAPLASGALCRGRV 172

Query: 365 KCPWHGACFNLKTGDIEDFPGFDSLPCYQVTVTDKGEVKVRA 490
           +CPWHGACFN+KTGDIEDFPG DS+P ++VTV+ + +V VRA
Sbjct: 173 RCPWHGACFNVKTGDIEDFPGLDSIPTFEVTVSGE-DVIVRA 213


>SB_13127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +1

Query: 634 RITVIAKEPHLPYD 675
           R+ ++AKEPHLPYD
Sbjct: 2   RVLLVAKEPHLPYD 15


>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 368 CPWHGACFNLKTGD 409
           CPWH   FNLKTG+
Sbjct: 131 CPWHNYDFNLKTGE 144


>SB_31707| Best HMM Match : Extensin_2 (HMM E-Value=0.19)
          Length = 309

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -1

Query: 644 TVIRPLNPSLRSDSAHVAPDGLQNTIT-TTEPSQGETTPIS 525
           T IR   P LR + AH  P G QNT T      Q   TPI+
Sbjct: 266 TTIRAPLPRLRPEYAHPIPHGDQNTRTPIPHGDQNTRTPIT 306


>SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
 Frame = +2

Query: 317 HYGAPLINSS---LGDGR---LKCPWHGACFNLKTGDIE 415
           H G PL       LG+ R   + CPWH   FN+ TG+ E
Sbjct: 439 HMGGPLHLGDIEELGEARRLCIVCPWHKWKFNIITGETE 477


>SB_21209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = +2

Query: 161 RMESTNNYVESVVCQENDLKDNEMKVFDI 247
           R+E   +Y ++++ ++N +KDN+ KV +I
Sbjct: 182 RLEGKLSYEDAILARQNLIKDNKQKVSEI 210


>SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22)
          Length = 649

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = +2

Query: 275 NRRENSPLSERSSTHYGAP----LINSSLGDGRLKCPWHGACFNLKTGDIEDFPGFDSLP 442
           NR   SP S +  ++ G P    ++NS + +GR++ P +G   ++      + PG   +P
Sbjct: 140 NRAYYSPQSGQFYSNVGNPETAFMLNSGVAEGRMRAPIYG---HMDATSFTNRPGASRVP 196

Query: 443 CYQ 451
            Y+
Sbjct: 197 FYK 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,149,564
Number of Sequences: 59808
Number of extensions: 443916
Number of successful extensions: 1417
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1416
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)