BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0242 (677 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g72090.1 68414.m08333 radical SAM domain-containing protein /... 31 0.93 At4g25650.2 68417.m03694 Rieske [2Fe-2S] domain-containing prote... 30 1.2 At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 30 1.2 At2g01890.2 68415.m00123 purple acid phosphatase, putative conta... 29 3.7 At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) / chlorop... 29 3.7 At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop... 29 3.7 At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop... 29 3.7 At3g63430.1 68416.m07142 expressed protein similarity to predict... 28 4.9 At2g36130.1 68415.m04436 peptidyl-prolyl cis-trans isomerase, pu... 28 4.9 At1g71500.1 68414.m08265 Rieske [2Fe-2S] domain-containing prote... 28 6.5 At4g18130.1 68417.m02695 phytochrome E (PHYE) identical to SP|P4... 27 8.6 >At1g72090.1 68414.m08333 radical SAM domain-containing protein / TRAM domain-containing protein contains Pfam profiles PF00919: UPF0004 family protein, PF04055: radical SAM domain protein, PF01938: TRAM domain Length = 601 Score = 30.7 bits (66), Expect = 0.93 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Frame = +3 Query: 273 ETEGRILRYRNEVQRIMEPLSSTARWGTED*SAL-GTGPASI*RPGTLKIFLVLIRCRAI 449 + +G+ + EVQ ++ P SS A WG D + + G +S+ T+ + L+ I CR + Sbjct: 544 DNKGKSKKEEKEVQEVVVPGSSVANWGFIDKALVCGVFVSSV----TILVLLISIACRVL 599 >At4g25650.2 68417.m03694 Rieske [2Fe-2S] domain-containing protein similar to cell death suppressor protein lls1 from Zea mays [gi:1935909], Rieske iron-sulfur protein Tic55 from Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske [2Fe-2S] domain Length = 559 Score = 30.3 bits (65), Expect = 1.2 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = +2 Query: 317 HYGAPLINSSLGD-GRLKCPWHGACFNLKTGDIEDFP 424 H APL + + GRL+C +HG CFN +GD + P Sbjct: 129 HRLAPLSDGRIDQWGRLQCVYHGWCFN-GSGDCKLIP 164 >At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein similar to cell death suppressor protein lls1 from Zea mays [gi:1935909], Rieske iron-sulfur protein Tic55 from Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske [2Fe-2S] domain Length = 536 Score = 30.3 bits (65), Expect = 1.2 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = +2 Query: 317 HYGAPLINSSLGD-GRLKCPWHGACFNLKTGDIEDFP 424 H APL + + GRL+C +HG CFN +GD + P Sbjct: 129 HRLAPLSDGRIDQWGRLQCVYHGWCFN-GSGDCKLIP 164 >At2g01890.2 68415.m00123 purple acid phosphatase, putative contains Pfam profile: PF00149 calcineurin-like phosphoesterase; identical to purple acid phosphatase (GI:20257479) [Arabidopsis thaliana]; Length = 307 Score = 28.7 bits (61), Expect = 3.7 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -3 Query: 171 DSIRDMVPRFSLQLPPWQLLGEYDLE*ELPIFFLTTAP 58 DS ++ SLQ P + +LG +D + IFF+ T P Sbjct: 102 DSFTNIYTATSLQKPWYNVLGNHDYREIVDIFFVDTTP 139 >At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) / chlorophyll b synthase identical to chlorophyll a oxygenase GI:5853117 from [Arabidopsis thaliana]; contains Pfam PF00355 Rieske [2Fe-2S] domain Length = 433 Score = 28.7 bits (61), Expect = 3.7 Identities = 9/22 (40%), Positives = 15/22 (68%) Frame = +2 Query: 317 HYGAPLINSSLGDGRLKCPWHG 382 H PL ++ +GR++CP+HG Sbjct: 264 HRACPLDLGTVNEGRIQCPYHG 285 >At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorophyll b synthase identical to chlorophyll a oxygenase GI:5853117 from [Arabidopsis thaliana]; contains Pfam PF00355 Rieske [2Fe-2S] domain Length = 511 Score = 28.7 bits (61), Expect = 3.7 Identities = 9/22 (40%), Positives = 15/22 (68%) Frame = +2 Query: 317 HYGAPLINSSLGDGRLKCPWHG 382 H PL ++ +GR++CP+HG Sbjct: 264 HRACPLDLGTVNEGRIQCPYHG 285 >At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorophyll b synthase identical to chlorophyll a oxygenase GI:5853117 from [Arabidopsis thaliana]; contains Pfam PF00355 Rieske [2Fe-2S] domain Length = 536 Score = 28.7 bits (61), Expect = 3.7 Identities = 9/22 (40%), Positives = 15/22 (68%) Frame = +2 Query: 317 HYGAPLINSSLGDGRLKCPWHG 382 H PL ++ +GR++CP+HG Sbjct: 264 HRACPLDLGTVNEGRIQCPYHG 285 >At3g63430.1 68416.m07142 expressed protein similarity to predicted protein, Arabidopsis thaliana Length = 540 Score = 28.3 bits (60), Expect = 4.9 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = -3 Query: 180 LLVDSIRDMVPRFSLQLPPWQLLGEYD 100 L+ D+++++V R LPPW ++GE D Sbjct: 428 LIFDAVQEIVAR-RRSLPPWMMVGEAD 453 >At2g36130.1 68415.m04436 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative contains Pfam domain, PF00160: peptidyl-prolyl cis-trans isomerase, cyclophilin-type Length = 164 Score = 28.3 bits (60), Expect = 4.9 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = -3 Query: 330 GAP*CVELRSDSGEFSLLFHYKHLPASPMSKTFISLSLRSF 208 G+P V L + G F++ +YKH P + + F+ LS R + Sbjct: 7 GSPPEVTLETSMGPFTVEMYYKHSPRT--CRNFLELSRRGY 45 >At1g71500.1 68414.m08265 Rieske [2Fe-2S] domain-containing protein contains Pfam profile PF00355: iron-sulfur cluster-binding protein, rieske family Length = 287 Score = 27.9 bits (59), Expect = 6.5 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = +2 Query: 320 YGAPLINSSLG-DGRLKCPWHGACFNLKTGDIEDF 421 Y L+N+ L DG + CP + F+L+TG+I ++ Sbjct: 127 YSEGLLNARLTQDGCIVCPSTDSTFDLRTGEIREW 161 >At4g18130.1 68417.m02695 phytochrome E (PHYE) identical to SP|P42498 Phytochrome E {Arabidopsis thaliana} Length = 1112 Score = 27.5 bits (58), Expect = 8.6 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = +2 Query: 380 GACFNLKTGDIEDFPGFDSLPCYQVTVTDKGEVKVRAKISDLK 508 GA + D++ G+D + YQ D GEV + SDL+ Sbjct: 219 GALCDTVVEDVQRLTGYDRVMVYQFHEDDHGEVVSEIRRSDLE 261 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,799,967 Number of Sequences: 28952 Number of extensions: 318083 Number of successful extensions: 799 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 785 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 799 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1428369392 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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