SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0242
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72090.1 68414.m08333 radical SAM domain-containing protein /...    31   0.93 
At4g25650.2 68417.m03694 Rieske [2Fe-2S] domain-containing prote...    30   1.2  
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote...    30   1.2  
At2g01890.2 68415.m00123 purple acid phosphatase, putative conta...    29   3.7  
At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) / chlorop...    29   3.7  
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop...    29   3.7  
At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop...    29   3.7  
At3g63430.1 68416.m07142 expressed protein similarity to predict...    28   4.9  
At2g36130.1 68415.m04436 peptidyl-prolyl cis-trans isomerase, pu...    28   4.9  
At1g71500.1 68414.m08265 Rieske [2Fe-2S] domain-containing prote...    28   6.5  
At4g18130.1 68417.m02695 phytochrome E (PHYE) identical to SP|P4...    27   8.6  

>At1g72090.1 68414.m08333 radical SAM domain-containing protein /
           TRAM domain-containing protein contains Pfam profiles
           PF00919: UPF0004 family protein, PF04055: radical SAM
           domain protein, PF01938: TRAM domain
          Length = 601

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 273 ETEGRILRYRNEVQRIMEPLSSTARWGTED*SAL-GTGPASI*RPGTLKIFLVLIRCRAI 449
           + +G+  +   EVQ ++ P SS A WG  D + + G   +S+    T+ + L+ I CR +
Sbjct: 544 DNKGKSKKEEKEVQEVVVPGSSVANWGFIDKALVCGVFVSSV----TILVLLISIACRVL 599


>At4g25650.2 68417.m03694 Rieske [2Fe-2S] domain-containing protein
           similar to cell death suppressor protein lls1 from Zea
           mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
           Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
           [2Fe-2S] domain
          Length = 559

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 317 HYGAPLINSSLGD-GRLKCPWHGACFNLKTGDIEDFP 424
           H  APL +  +   GRL+C +HG CFN  +GD +  P
Sbjct: 129 HRLAPLSDGRIDQWGRLQCVYHGWCFN-GSGDCKLIP 164


>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
           similar to cell death suppressor protein lls1 from Zea
           mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
           Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
           [2Fe-2S] domain
          Length = 536

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 317 HYGAPLINSSLGD-GRLKCPWHGACFNLKTGDIEDFP 424
           H  APL +  +   GRL+C +HG CFN  +GD +  P
Sbjct: 129 HRLAPLSDGRIDQWGRLQCVYHGWCFN-GSGDCKLIP 164


>At2g01890.2 68415.m00123 purple acid phosphatase, putative contains
           Pfam profile: PF00149 calcineurin-like phosphoesterase;
           identical to purple acid phosphatase (GI:20257479)
           [Arabidopsis thaliana];
          Length = 307

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 171 DSIRDMVPRFSLQLPPWQLLGEYDLE*ELPIFFLTTAP 58
           DS  ++    SLQ P + +LG +D    + IFF+ T P
Sbjct: 102 DSFTNIYTATSLQKPWYNVLGNHDYREIVDIFFVDTTP 139


>At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 433

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 317 HYGAPLINSSLGDGRLKCPWHG 382
           H   PL   ++ +GR++CP+HG
Sbjct: 264 HRACPLDLGTVNEGRIQCPYHG 285


>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 511

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 317 HYGAPLINSSLGDGRLKCPWHG 382
           H   PL   ++ +GR++CP+HG
Sbjct: 264 HRACPLDLGTVNEGRIQCPYHG 285


>At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 536

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 317 HYGAPLINSSLGDGRLKCPWHG 382
           H   PL   ++ +GR++CP+HG
Sbjct: 264 HRACPLDLGTVNEGRIQCPYHG 285


>At3g63430.1 68416.m07142 expressed protein similarity to predicted
           protein, Arabidopsis thaliana
          Length = 540

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 180 LLVDSIRDMVPRFSLQLPPWQLLGEYD 100
           L+ D+++++V R    LPPW ++GE D
Sbjct: 428 LIFDAVQEIVAR-RRSLPPWMMVGEAD 453


>At2g36130.1 68415.m04436 peptidyl-prolyl cis-trans isomerase,
           putative / cyclophilin, putative / rotamase, putative
           contains Pfam domain, PF00160: peptidyl-prolyl cis-trans
           isomerase, cyclophilin-type
          Length = 164

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 330 GAP*CVELRSDSGEFSLLFHYKHLPASPMSKTFISLSLRSF 208
           G+P  V L +  G F++  +YKH P +   + F+ LS R +
Sbjct: 7   GSPPEVTLETSMGPFTVEMYYKHSPRT--CRNFLELSRRGY 45


>At1g71500.1 68414.m08265 Rieske [2Fe-2S] domain-containing protein
           contains Pfam profile PF00355: iron-sulfur
           cluster-binding protein, rieske family
          Length = 287

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 320 YGAPLINSSLG-DGRLKCPWHGACFNLKTGDIEDF 421
           Y   L+N+ L  DG + CP   + F+L+TG+I ++
Sbjct: 127 YSEGLLNARLTQDGCIVCPSTDSTFDLRTGEIREW 161


>At4g18130.1 68417.m02695 phytochrome E (PHYE) identical to
           SP|P42498 Phytochrome E {Arabidopsis thaliana}
          Length = 1112

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 380 GACFNLKTGDIEDFPGFDSLPCYQVTVTDKGEVKVRAKISDLK 508
           GA  +    D++   G+D +  YQ    D GEV    + SDL+
Sbjct: 219 GALCDTVVEDVQRLTGYDRVMVYQFHEDDHGEVVSEIRRSDLE 261


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,799,967
Number of Sequences: 28952
Number of extensions: 318083
Number of successful extensions: 799
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -