Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0241
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar...    25   4.5  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   4.5  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    24   7.8  
SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces po...    24   7.8  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    24   7.8  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    24   7.8  

>SPAC6G9.03c |mug183||histone chaperone
           Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 69  INFTINGEQYSLXGADVSPVTSLNDYIRHH 158
           +NF   G  YS    D S   ++NDY   H
Sbjct: 252 VNFEAGGTIYSFDMVDQSVFRAVNDYATKH 281


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 266 VNSCLVHILSCHEWY 310
           + +C V    CHEWY
Sbjct: 146 MRNCKVQCFDCHEWY 160


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = +3

Query: 120 SPVTSLNDYIRHHLQ 164
           SP++SL+++IR HL+
Sbjct: 741 SPISSLSEWIREHLK 755


>SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 418

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 13/57 (22%), Positives = 25/57 (43%)
 Frame = +2

Query: 215 GLCSADTSHHQKGETLAVNSCLVHILSCHEWYITTVEGVGNRRDGYHAIQERLAMFN 385
           G+C+         + +  N     IL   ++ ++    VG+R  G++AI+ R    N
Sbjct: 310 GMCAFTHKAGIHAKAILANPSTYEILKPEDFGMSRYVHVGSRLTGWNAIKSRAEQLN 366


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 247 KRRNSRCKFLSRSH 288
           KR N+RC FLS  H
Sbjct: 622 KRENTRCNFLSSLH 635


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 268 KFLSRSHPLLSRMVHNDRGRRGQSK-RRLPRHTGA 369
           +  S   PL+ RMV+     R  SK +RL R T +
Sbjct: 459 RLASHEEPLIDRMVNQSPDTRSVSKSKRLVRETSS 493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,797,550
Number of Sequences: 5004
Number of extensions: 35492
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)