Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0241
         (406 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)            69   1e-12
SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.36 
SB_49489| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_15335| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_54467| Best HMM Match : GLTT (HMM E-Value=0.52)                     29   1.9  
SB_17971| Best HMM Match : SsgA (HMM E-Value=7.3)                      29   1.9  
SB_37543| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_37429| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_58954| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
          Length = 1644

 Score = 68.9 bits (161), Expect = 1e-12
 Identities = 28/53 (52%), Positives = 39/53 (73%)
 Frame = +2

Query: 248 KGETLAVNSCLVHILSCHEWYITTVEGVGNRRDGYHAIQERLAMFNGTXCGYC 406
           K  T AVNSCL  + + +E ++TT EG+GNR+ G+H IQ+RLA  NG+ CG+C
Sbjct: 218 KDVTKAVNSCLFPLYAANESHVTTTEGIGNRKKGFHVIQKRLAEHNGSQCGFC 270



 Score = 64.1 bits (149), Expect = 4e-11
 Identities = 30/62 (48%), Positives = 39/62 (62%)
 Frame = +3

Query: 69  INFTINGEQYSLXGADVSPVTSLNDYIRHHLQLHGTKAMCHEVGCXACVVSVQLTHPTTK 248
           + FT+NG QY++   D    TSLN++IR+   L GTK MC E GC  CVV+V    PTT 
Sbjct: 160 LTFTVNGAQYTVHNPDAH--TSLNEWIRNQPGLKGTKVMCKEAGCGVCVVAVTKKDPTTG 217

Query: 249 KE 254
           K+
Sbjct: 218 KD 219


>SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1328

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 198 GCXACVVSVQLTHPTTKKEKLS-L*ILVSFTSSPVTNGT*RPWKA 329
           GC + VV +Q TH T  K  LS +  + +F+  P  +G+ R WKA
Sbjct: 435 GCFSAVVQIQPTHQTMSKHTLSGIQSINNFSFGP--DGSIRVWKA 477


>SB_49489| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 279 RQEFTARVSPFWWWDVSAEQRPRMPXSRLRGTSPSYH 169
           + E    ++P  WW V   + PR+P S   GT  + H
Sbjct: 253 KAECNPDMAPQHWWSVEPNKVPRVPSSPPHGTYSTLH 289


>SB_15335| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +2

Query: 170 WYEGDVPRSRLXGMRGLCSADTSHHQKGETLAVNSCLVHILSCHEWYIT 316
           W    + RSR  G   LC  D   ++ GE++  ++C  ++ +C   Y T
Sbjct: 113 WLHAGLSRSREAGAEKLCEYDGKLYKHGESITQDNC-SYLCTCDANYPT 160


>SB_54467| Best HMM Match : GLTT (HMM E-Value=0.52)
          Length = 353

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = +2

Query: 197 RLXGMRGLCSADTSHHQKGETLAV-NSCLVHILSCHEWYITTVEGVGNRRDGYHAIQERL 373
           RL   +GL  +  SH Q  E L + +  L      HE ++   + V N  +    ++ERL
Sbjct: 104 RLRVSQGLVESSNSHRQSDEWLVLRDEMLRRFPDLHE-HVEMADSVQNLAEVAKELEERL 162

Query: 374 AMFNGTXC 397
           +    T C
Sbjct: 163 SQLTVTLC 170


>SB_17971| Best HMM Match : SsgA (HMM E-Value=7.3)
          Length = 314

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 380 TSPGAPVWRGSRLFDCPRLPRSLCTIRDRRGCERDKNLQRE 258
           T P   V R S+LFD     R++C  +  R C R K +Q +
Sbjct: 200 TPPLDDVTRESKLFDRKSYNRTVCKTKMGRNCLRHKGVQHK 240


>SB_37543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 352 VAVSSIAHAFHGRYVPFVTGEDVNETRIYSES 257
           V +S + H F  RY+P  TGE +   + Y+ +
Sbjct: 306 VQISKVKHVFAKRYIPNWTGEVITVGQRYNNT 337


>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 221 CSADTSHHQKGETLAVNSCLVHILSCH 301
           C A     +K  TL    C  H+L+CH
Sbjct: 384 CKAPNKLRKKNCTLVATRCKEHVLTCH 410


>SB_37429| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 238 PPPKRRNSRCKFLSR-SHPLLSRMVHNDRGRRGQSKR 345
           PP KRR + C+  S+ ++ L+ + V  D     QS+R
Sbjct: 120 PPTKRRRTACELASKTANALIQKRVCRDTEAISQSRR 156


>SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 579

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
 Frame = -1

Query: 391 SPVEHRQALLYGV----VAVSSIAHAFHGRY-VPFVTGEDVNETRIYSESFSFLVVGCVS 227
           SPVE       GV      VSS AH  HGR   P       ++ R +S S S LV+ CVS
Sbjct: 150 SPVESESPSQDGVQRVGYKVSSEAH-IHGRQSFPLSLDHCCDQKRSFSFSVSPLVLSCVS 208

Query: 226 *TETT-HA-XQPTSWHI 182
            + ++ H     T+W +
Sbjct: 209 SSSSSAHCDTSSTAWQM 225


>SB_58954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 238 PPPKRRNSRCKFLSRSHPLLSRMVHNDRGRRGQSKRRLP 354
           P P +RNSR   L   +    R+ H+DR R      R+P
Sbjct: 79  PKPVKRNSRAAMLKNYNEEDWRLQHSDRRRERVVFERVP 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,125,343
Number of Sequences: 59808
Number of extensions: 303506
Number of successful extensions: 715
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)