Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0240
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    47   4e-06
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    31   0.14 
SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.4  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   7.1  
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    26   7.1  

>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 21/50 (42%), Positives = 32/50 (64%)
 Frame = +2

Query: 86  TPNSKIIVDGDISLFDMGGNYAGYAADITCSFPANGKFTEDQKLIYEAVL 235
           T N+ I    ++ L D GG + GY  DI+ ++P NGKF+  Q+ +Y+AVL
Sbjct: 302 TINNDIFRPDEMVLVDAGGEFGGYVTDISRTWPINGKFSTVQRDLYQAVL 351



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +3

Query: 504 QTLLAGMVLTVEPGCYFIPRLLDSARNNPEQSRFFNWHRVERFIGFGGVRIEDDVLITDD 683
           Q L    V+T+EPG Y            PE+  +  W +     G   +RIED V++ DD
Sbjct: 423 QPLRKNQVITIEPGLYV-----------PEEDGWPQWAQ-----GI-AIRIEDSVIVGDD 465

Query: 684 GVENLT-FVPRTVQEIE 731
               LT   P+ ++EIE
Sbjct: 466 KPFVLTSAAPKEIEEIE 482



 Score = 27.5 bits (58), Expect = 2.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 1   VGGCRHVSYTCICRSGHNAATLHY 72
           +GGC   +Y  +   G N  T+HY
Sbjct: 278 IGGCDRSAYVPVVAGGKNGLTIHY 301


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 552 FIPRLLDSARNNPEQSRFFNWHRVERFIGF 641
           F+PR L   ++N    ++ +W R+ +F+GF
Sbjct: 344 FLPRWLPCIKHNQHNEKWISWIRIPKFLGF 373


>SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 95

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/43 (27%), Positives = 27/43 (62%)
 Frame = +1

Query: 493 LRTARHS*LEWY*LSSRAAILYQDYWIRPETTRSSLVSSTGTE 621
           +RT R +  ++   S R  I+Y++ W+ P +  +SL+++ G++
Sbjct: 1   MRTGRKTCTDYINKSFREQIIYKEEWL-PRSIPTSLLTAAGSK 42


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/60 (23%), Positives = 27/60 (45%)
 Frame = +2

Query: 89  PNSKIIVDGDISLFDMGGNYAGYAADITCSFPANGKFTEDQKLIYEAVLFARDAVKEKRN 268
           P + ++V     +F    N  G +  +  S     +  +  K +YE +L+  DA+  +RN
Sbjct: 416 PLADVVVSSLTKIFSGDSNVMGGSMVLNPSSRYYSRIKDAMKALYEDLLYDEDALTLERN 475


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 24/68 (35%), Positives = 31/68 (45%)
 Frame = +2

Query: 434 TMWEDICLTVLRG*LALWPNYAQPDTLSWNGTDCRAGLLFYTKIIGFGPKQPGAVSFLQL 613
           T  +D+ L V R     +P+  Q     W  T  +  L+ YT  I F   Q G  SFLQ 
Sbjct: 264 TSEKDLLLRVERKGQFYFPSSVQ----CWFHTHFQPMLVEYTNGINF---QQGINSFLQG 316

Query: 614 AQSRTFHW 637
            QS +F W
Sbjct: 317 QQSISFSW 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,173,467
Number of Sequences: 5004
Number of extensions: 63162
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)