Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0240
(794 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0120 + 6984482-6984643,6984748-6984797,6984936-6984996,698... 96 3e-20
12_02_0786 + 23139854-23139901,23140054-23140122,23140531-231405... 46 3e-05
02_04_0182 + 20719782-20720033,20720502-20720605,20720693-207210... 31 1.4
02_04_0148 - 20198407-20201424 29 3.2
05_06_0131 - 25888434-25888931,25889105-25889155,25889249-258893... 29 4.3
12_02_0389 - 18499372-18499606,18499713-18499882 28 7.4
01_06_0649 + 30861946-30862179,30862702-30862824,30863104-308631... 28 7.4
03_05_0511 + 25056018-25059107 28 9.8
03_05_0130 - 21104668-21105030,21106045-21106203,21106265-21107032 28 9.8
>02_02_0120 +
6984482-6984643,6984748-6984797,6984936-6984996,
6985574-6985669,6985754-6985903,6986208-6986339,
6986641-6986768,6987285-6987327,6987935-6988018,
6989049-6989090,6989264-6989334,6989621-6989674,
6989789-6989894,6990038-6990106,6990824-6990967,
6992038-6992113,6992295-6992353
Length = 508
Score = 95.9 bits (228), Expect = 3e-20
Identities = 44/78 (56%), Positives = 54/78 (69%)
Frame = +3
Query: 510 LLAGMVLTVEPGCYFIPRLLDSARNNPEQSRFFNWHRVERFIGFGGVRIEDDVLITDDGV 689
L GMV+TVEPGCYFI LL AR++P S+FFNW +E++ FGGVRIE DV +T G
Sbjct: 412 LKEGMVITVEPGCYFIDALLIPARDDPVSSKFFNWEEIEKYKSFGGVRIESDVYVTAHGC 471
Query: 690 ENLTFVPRTVQEIEEFMS 743
+NLT PR EIE M+
Sbjct: 472 KNLTNCPRETWEIEAVMA 489
Score = 72.5 bits (170), Expect = 3e-13
Identities = 31/61 (50%), Positives = 41/61 (67%)
Frame = +2
Query: 89 PNSKIIVDGDISLFDMGGNYAGYAADITCSFPANGKFTEDQKLIYEAVLFARDAVKEKRN 268
PN + + DGD++L DMGG Y Y +DITCS+P NGKF +Q ++Y AVL A +AV
Sbjct: 271 PNDRTLNDGDMALMDMGGEYHCYGSDITCSYPINGKFNSNQTIVYNAVLKAHNAVIAHMR 330
Query: 269 P 271
P
Sbjct: 331 P 331
Score = 66.5 bits (155), Expect = 2e-11
Identities = 36/132 (27%), Positives = 53/132 (40%)
Frame = +1
Query: 4 GGCRHVSYTCICRSGHNAATLHYGHAGHS*QQDYXXXXXXXXXXXXXXXXXXXXXXXXFP 183
GGCRH SYTCIC +G N++ LHYGHA + +P
Sbjct: 243 GGCRHCSYTCICATGENSSVLHYGHAAAPNDRTLNDGDMALMDMGGEYHCYGSDITCSYP 302
Query: 184 G*REIYGGSKIDL*SCALCQRCR*REAKPGVFWHEMHLTANRAMLAHLKMGGLLQGDIEE 363
+ I + +PGV W +MH A + +L LK +L GD+ +
Sbjct: 303 INGKFNSNQTIVYNAVLKAHNAVIAHMRPGVNWLDMHKLAEQTILESLKNERILHGDVTD 362
Query: 364 MIRNGVNGILQP 399
M+ + + P
Sbjct: 363 MMAQRLGAVFMP 374
>12_02_0786 +
23139854-23139901,23140054-23140122,23140531-23140544,
23140603-23140675,23140875-23140979,23141817-23142080,
23142159-23142251,23142381-23142587,23143155-23143258,
23143436-23143502,23143576-23143683,23143943-23144033,
23144123-23144193,23144421-23144549,23144659-23144766
Length = 516
Score = 46.4 bits (105), Expect = 3e-05
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +3
Query: 483 SGQTTHSQTLLAGMVLTVEPGCYFIPRLLDSARNNPEQSRFFNWHRVERFIGFGGVRIED 662
S + + + L G+++T+EPG Y IP + N P+ R+ G G +RIED
Sbjct: 425 SVKLSKDKPLEPGVIITIEPGVY-IPPVPILKENAPD-----------RYRGIG-IRIED 471
Query: 663 DVLITDDGVENLT-FVPRTVQEIEEFMSNGSN 755
+VLIT+ G E LT VP+ + I M+ GSN
Sbjct: 472 EVLITESGHEVLTASVPKEISHITTLMNMGSN 503
Score = 33.1 bits (72), Expect = 0.26
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 113 GDISLFDMGGNYAGYAADITCSFPANGKFTEDQ 211
G++ L D+G Y GY +D+T ++P G+F+ Q
Sbjct: 352 GELLLMDVGCEYHGYLSDLTRTWPPCGRFSPAQ 384
>02_04_0182 +
20719782-20720033,20720502-20720605,20720693-20721066,
20721302-20721609,20721853-20722092
Length = 425
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Frame = +2
Query: 8 GADMFRTLAYADRGTTPRHFTTATPG---TPNSKIIVDGDISLFDMGGNYAGYAADITCS 178
G D F TL D GT P +T + N K +V D+S+ + + D
Sbjct: 117 GVDGFPTLMLFDHGT-PTEYTGSRKADLLVENLKKLVAPDVSVLESDSAIKSFVEDAGMG 175
Query: 179 FPANGKFTEDQKLIYE 226
FP F D+ LI E
Sbjct: 176 FPLFLGFGVDESLIVE 191
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3
Query: 702 FVPRTVQEIEEFMSNGSNFNKNL 770
FVP+T +EIEEF +GSN NL
Sbjct: 950 FVPKTREEIEEF-GDGSNIGPNL 971
>05_06_0131 -
25888434-25888931,25889105-25889155,25889249-25889331,
25889733-25889826,25890188-25890310,25890909-25891154
Length = 364
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 552 FIPRLLDSARNNPEQSRFFNWHRVERFIGFGGVRIEDDV 668
F P LL + N +S F W R+++++ G V DV
Sbjct: 57 FYPTLLYNVLRNRFESEFRWWDRIDQYVLLGAVPFSSDV 95
>12_02_0389 - 18499372-18499606,18499713-18499882
Length = 134
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -2
Query: 613 QLKKRDCSGLFRAESNNLGIK*QPGSTVSTIPAKSVWLCV-VWPEGQSSSEDS*ADILPH 437
Q+ R C R E +GIK + IPA+S W+CV ++ EG S + P
Sbjct: 66 QIDSRQC----RIEERPVGIKLIVVAAEELIPARSWWICVDLFAEGVGWMACSGEHLKPK 121
Query: 436 RAR 428
AR
Sbjct: 122 HAR 124
>01_06_0649 +
30861946-30862179,30862702-30862824,30863104-30863197,
30863819-30863901,30863984-30864073,30864176-30864562,
30864903-30864991,30867801-30867907,30868431-30868822
Length = 532
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 552 FIPRLLDSARNNPEQSRFFNWHRVERFIGFGGVRIEDDV 668
F P LL + N ++ F W RV+++I G V DV
Sbjct: 53 FYPTLLYNVLRNRFEAEFRWWDRVDQYILLGAVPFPSDV 91
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +3
Query: 690 ENLTFVPRTVQEIEEF---MSNGSNFNKNLNSMFKRTK 794
E+ F+P+T +EIEEF S G N K L + +R K
Sbjct: 970 EDPFFIPKTHEEIEEFGDGSSIGPNLAKKLMNSVRRRK 1007
>03_05_0130 - 21104668-21105030,21106045-21106203,21106265-21107032
Length = 429
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 114 PSTIILLLGVPGVAVVKCRGVVPRSAYASVRNMSA 10
PS+ IL P ++ V CR V P + ++S R ++A
Sbjct: 17 PSSPILASHPPPLSTVACRPVPPPNRFSSARRLAA 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,373,790
Number of Sequences: 37544
Number of extensions: 443820
Number of successful extensions: 1005
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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