Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0240
(794 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19952| Best HMM Match : Peptidase_M24 (HMM E-Value=4e-05) 100 3e-21
SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_2578| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 5e-07
SB_19954| Best HMM Match : AMP_N (HMM E-Value=1.6e-32) 31 1.4
SB_44242| Best HMM Match : SATase_N (HMM E-Value=0.27) 30 2.5
SB_25470| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_30102| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_37048| Best HMM Match : Phage_tube (HMM E-Value=7.3) 28 7.6
SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_19952| Best HMM Match : Peptidase_M24 (HMM E-Value=4e-05)
Length = 173
Score = 99.5 bits (237), Expect = 3e-21
Identities = 46/82 (56%), Positives = 59/82 (71%)
Frame = +3
Query: 504 QTLLAGMVLTVEPGCYFIPRLLDSARNNPEQSRFFNWHRVERFIGFGGVRIEDDVLITDD 683
+ L MVLT+EPG YFI +L+ A NPE S FFN +E F+ FGGVRIEDD+++T D
Sbjct: 73 RVLEQNMVLTIEPGIYFIRPVLEPAFTNPEISHFFNREMIEDFLDFGGVRIEDDIVVTSD 132
Query: 684 GVENLTFVPRTVQEIEEFMSNG 749
G+E +T VPRTV+EIE M+ G
Sbjct: 133 GMELMTCVPRTVEEIEALMAQG 154
>SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 54.4 bits (125), Expect = 1e-07
Identities = 23/48 (47%), Positives = 34/48 (70%)
Frame = +2
Query: 92 NSKIIVDGDISLFDMGGNYAGYAADITCSFPANGKFTEDQKLIYEAVL 235
N++++ DGD+ L D G Y GYA+DIT ++P NG FT Q+ +Y+ VL
Sbjct: 335 NTQVLRDGDLVLMDSGCEYHGYASDITRTWPVNGTFTGPQRELYDIVL 382
Score = 40.3 bits (90), Expect = 0.002
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +3
Query: 495 THSQTLLAGMVLTVEPGCYFIPRLLDSARNNPEQSRFFNWHRVERFIGFGGVRIEDDVLI 674
+ S ++ GMV+T+EPG Y ++ N R+ H + G+RIEDD+LI
Sbjct: 438 SRSLSMQPGMVVTIEPGLYI------NSNNKIIDKRY---HGI-------GIRIEDDILI 481
Query: 675 TDDGVENLTF-VPRTVQEIEEFM 740
T++G E L+ P+ +EIE+ M
Sbjct: 482 TEEGQEVLSAECPKDPKEIEKLM 504
>SB_2578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 52.0 bits (119), Expect = 5e-07
Identities = 24/48 (50%), Positives = 33/48 (68%)
Frame = +3
Query: 564 LLDSARNNPEQSRFFNWHRVERFIGFGGVRIEDDVLITDDGVENLTFV 707
+L+ A NPE SRF N +E F+ FGG+R DD+++T DG+E L FV
Sbjct: 1 ILEPALKNPEISRFLNRAMIEDFLDFGGLRFADDIVVTSDGME-LIFV 47
>SB_19954| Best HMM Match : AMP_N (HMM E-Value=1.6e-32)
Length = 198
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 4 GGCRHVSYTCICRSG 48
GGCRH SYTCI +G
Sbjct: 141 GGCRHTSYTCIGATG 155
>SB_44242| Best HMM Match : SATase_N (HMM E-Value=0.27)
Length = 426
Score = 29.9 bits (64), Expect = 2.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 440 WEDICLTVLRG*LALWPNYAQP 505
WED+C TVL + LW + +P
Sbjct: 102 WEDLCRTVLNKDMCLWDTFLRP 123
>SB_25470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +2
Query: 515 SWNGTDCRAGLLFYTKIIGFGPKQPGAVSFLQLAQSRT 628
SWNGT+ A F K + GPKQ G VSF ++ ++ T
Sbjct: 146 SWNGTE-EAVRDFIHKNLKAGPKQAGDVSFERVHRTGT 182
>SB_30102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +2
Query: 83 GTPNSKIIVDGDISLFDMGGNYAGYAADITCSFPANGKFTEDQKLI---YEAVLFARD 247
G P+ + + DGDI D+ Y GY D+ +F E ++L+ YE ++ A D
Sbjct: 10 GIPDKRPLEDGDIVNLDITVFYNGYHGDLNETFFVGNVADEYKQLVKVTYECLMQAID 67
>SB_37048| Best HMM Match : Phage_tube (HMM E-Value=7.3)
Length = 270
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 498 HSQTLLAGMVLTVEP-GCYFIPRLLDSARNNPEQSRFFNWHRVERFIGFGGVRIEDDVLI 674
H + GM+ P GC + RL ++ + +++W+ E +G+ G +E D+L+
Sbjct: 120 HVTRYVTGMLFDATPRGCVPLDRLEETVKG------WYDWYGQEGIVGYKGGNVERDLLL 173
>SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 910
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 38 ADRGTTPRHFTTATPGTPNSKIIVDGDISLFDMGGNYAGYAADITCSFPA 187
+DRG TPR F + N ++ G + + + G A+ T FP+
Sbjct: 718 SDRGLTPREFNSYGSRRGNDAVMARGTFANIRLVNKFIGKASPKTKHFPS 767
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,341,154
Number of Sequences: 59808
Number of extensions: 511089
Number of successful extensions: 1189
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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