Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0240
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical ...    94   1e-19
AF063007-3|AAC16431.2|  362|Caenorhabditis elegans Hypothetical ...    36   0.025
Z54271-3|CAA91039.1|  713|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AC025716-11|AAK39605.1|  823|Caenorhabditis elegans Yeast mcm (l...    28   8.9  

>AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical
           protein K12C11.1 protein.
          Length = 498

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 42/90 (46%), Positives = 64/90 (71%)
 Frame = +3

Query: 501 SQTLLAGMVLTVEPGCYFIPRLLDSARNNPEQSRFFNWHRVERFIGFGGVRIEDDVLITD 680
           ++TL+  M +T+EPGCYFI  LL+ A  +P++S F     ++++ G GGVRIEDDV+I  
Sbjct: 398 TRTLMERMAITIEPGCYFIDFLLNEALADPKKSEFLVKSEIDKYRGSGGVRIEDDVIIRA 457

Query: 681 DGVENLTFVPRTVQEIEEFMSNGSNFNKNL 770
            G ENL+ +PRTV+EIE FM++G  + + +
Sbjct: 458 SGNENLSDLPRTVEEIENFMASGGEWTEKV 487



 Score = 85.0 bits (201), Expect = 6e-17
 Identities = 50/169 (29%), Positives = 70/169 (41%), Gaps = 1/169 (0%)
 Frame = +1

Query: 4   GGCRHVSYTCICRSGHNAATLHYGHAGHS*QQDYXXXXXXXXXXXXXXXXXXXXXXXXFP 183
           GGCRH++YTCI  +G N + LHYGHA     +                          FP
Sbjct: 231 GGCRHLAYTCIAATGCNGSVLHYGHANAPNDKFIKDGDMCLFDMGPEYNCYASDITTSFP 290

Query: 184 G*REIYGGSKIDL*SCALCQRCR*REAKPGVFWHEMHLTANRAMLAHLKMGGLLQGDIEE 363
              +     KI   +         + AKPGV W +MH+ + + +L HLK  GL+ GDI++
Sbjct: 291 SNGKFTEKQKIVYNAVLAANLAVLKAAKPGVRWTDMHILSEKVILEHLKQAGLIVGDIDK 350

Query: 364 MIRNGVNGILQPXXXXXXXXXXXXXXXXYLPNCPPRMTGP-LAKLRTAR 507
            +   V  +  P                Y+ +  PR T P L  LRT R
Sbjct: 351 AVEARVGAVFMPHGLGHLIGLDVHDCGGYMGDATPRSTLPGLKSLRTTR 399



 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 37/61 (60%), Positives = 43/61 (70%)
 Frame = +2

Query: 89  PNSKIIVDGDISLFDMGGNYAGYAADITCSFPANGKFTEDQKLIYEAVLFARDAVKEKRN 268
           PN K I DGD+ LFDMG  Y  YA+DIT SFP+NGKFTE QK++Y AVL A  AV +   
Sbjct: 259 PNDKFIKDGDMCLFDMGPEYNCYASDITTSFPSNGKFTEKQKIVYNAVLAANLAVLKAAK 318

Query: 269 P 271
           P
Sbjct: 319 P 319


>AF063007-3|AAC16431.2|  362|Caenorhabditis elegans Hypothetical
           protein R119.2 protein.
          Length = 362

 Score = 36.3 bits (80), Expect = 0.025
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +2

Query: 125 LFDMGGNYAGYAADITCSFPANGKFTEDQKLIYEAVLFARD 247
           L D G +  GY +D+T  FP +G +++ Q  +YEA+L+  +
Sbjct: 183 LVDAGCDLNGYVSDVTRCFPISGFWSDAQLSLYEALLYVHE 223


>Z54271-3|CAA91039.1|  713|Caenorhabditis elegans Hypothetical
           protein F21D5.3 protein.
          Length = 713

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 594 QSRFFNWHRVERFIGFGGVRIEDDVLITDDGVENL 698
           Q  FF+W  +    GFG +  E D L  D    NL
Sbjct: 367 QKYFFDWKEIPIVYGFGYIEYETDGLPEDKTTPNL 401


>AC025716-11|AAK39605.1|  823|Caenorhabditis elegans Yeast mcm
           (licensing factor) relatedprotein 4 protein.
          Length = 823

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +3

Query: 465 SEDDWPSGQTTHSQTLLA--GMVLTVEPG 545
           S DD PSG+T H+ ++ A   +V +V+PG
Sbjct: 320 SPDDMPSGETPHTVSVYAHGSLVESVQPG 348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,915,630
Number of Sequences: 27780
Number of extensions: 371849
Number of successful extensions: 953
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)