Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0240
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   10.0 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   10.0 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   10.0 

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 653  PYSAEANETFYSVPVEETRLLRVVSGRIQ*SW 558
            P   +  E   S+P E+ R   + S  +Q SW
Sbjct: 1101 PLLTQTMEDVPSIPPEDVRCAALTSQSLQVSW 1132


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 653  PYSAEANETFYSVPVEETRLLRVVSGRIQ*SW 558
            P   +  E   S+P E+ R   + S  +Q SW
Sbjct: 1097 PLLTQTMEDVPSIPPEDVRCAALTSQSLQVSW 1128


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = -1

Query: 740 HKFFNFLNGARNKRQILNAVVRYKNIVFNPYSAEAN 633
           +K  N     ++K    N   ++ ++  +PY  EAN
Sbjct: 444 YKTVNLAAEKKDKNSFFNMFKKFASLKKSPYFKEAN 479


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = -1

Query: 542 RLDSQYHSS*ECLAVRSLARGPVIL 468
           +++S +H++ E  +  SL  GP+++
Sbjct: 522 KVESAFHNAEEAFSPLSLLGGPLVM 546


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = -1

Query: 740 HKFFNFLNGARNKRQILNAVVRYKNIVFNPYSAEAN 633
           +K  N     ++K    N   ++ ++  +PY  EAN
Sbjct: 444 YKTVNLAAEKKDKNSFFNMFKKFASLKKSPYFKEAN 479


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,972
Number of Sequences: 438
Number of extensions: 4671
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)