Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0239
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1475 + 33856351-33856582,33857614-33857781,33858156-338582... 50 2e-06
02_04_0207 + 20933319-20933427,20933503-20933701,20933785-209339... 41 0.001
09_06_0274 + 21967740-21968230,21968411-21968550,21968711-219689... 39 0.003
02_01_0729 - 5465521-5466005,5466481-5466793,5466878-5467094,546... 38 0.010
04_04_0927 + 29467121-29467168,29467518-29467604,29468180-294682... 32 0.37
04_03_1008 + 21691299-21691413,21691524-21691863,21692344-216924... 32 0.37
01_07_0288 + 42534552-42534558,42535302-42537280,42537367-425375... 32 0.49
05_01_0048 + 331155-333077,333208-333354,333540-334087,334481-33... 31 1.1
02_05_0336 + 28033315-28033365,28033580-28033585,28033798-280338... 30 1.5
05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433... 30 2.0
01_06_0910 - 32922459-32922646,32922725-32922823,32923371-329235... 29 2.6
09_06_0094 - 20831530-20831997 29 3.4
01_06_1078 + 34378985-34380064,34380155-34380283,34380362-343804... 29 4.5
10_05_0065 + 8736744-8738879 28 7.9
07_01_0466 - 3518315-3521428 28 7.9
>04_04_1475 +
33856351-33856582,33857614-33857781,33858156-33858261,
33858391-33858442,33858525-33858642,33858736-33858766,
33858962-33858985,33859075-33859199,33860087-33860168,
33860319-33860441,33860539-33860592,33860669-33860738,
33861276-33861309,33861824-33862170
Length = 521
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +2
Query: 8 VGTSNTSIVIAADDSLIAWGVSPTYGELGMGEIN-KSTAKPKEVSRMDSLGITQVAMGYS 184
+ + N V+ ADDS I+WG + GELG G KS+A PK+V ++ + + V GY
Sbjct: 320 MASGNMHHVVGADDSCISWGTAQN-GELGYGPNGQKSSANPKKVDILEGMHVISVGCGYG 378
Query: 185 HTLLLCDNNIEEVKQKLDTIPAFD 256
+ ++ D +I +L+ + +D
Sbjct: 379 LSAIVVDRSI--ASDRLNQLDIYD 400
>02_04_0207 +
20933319-20933427,20933503-20933701,20933785-20933931,
20934683-20934764,20935542-20935697,20935948-20936121,
20936278-20936349,20937012-20937083,20937322-20937440,
20937540-20937625,20937747-20937799,20938076-20938153
Length = 448
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/60 (33%), Positives = 36/60 (60%)
Frame = +2
Query: 26 SIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCD 205
++ +AAD L WG + +G++G+G+ N+ P +V+ + + QVA G+ HTL L +
Sbjct: 297 TMALAADGKLYGWGWNK-FGQVGVGD-NEDHCSPVQVNFPNEQKVVQVACGWRHTLALTE 354
>09_06_0274 +
21967740-21968230,21968411-21968550,21968711-21968905,
21969524-21969652,21970063-21970218,21970507-21970589,
21972229-21972433,21972601-21972805,21973059-21973194,
21973990-21974164,21974470-21974528,21974642-21974716,
21974804-21974920,21975010-21975080,21975170-21975473,
21975721-21976086,21976404-21976514
Length = 1005
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = +2
Query: 26 SIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCD 205
++ + +D L +WG + + ELG G N S +P+ + + +L + QVA G H+L L D
Sbjct: 262 TMALTSDGQLWSWGANSNF-ELGRGS-NSSDWRPQLIPSLKNLHVIQVACGGYHSLALTD 319
Query: 206 NNI 214
+
Sbjct: 320 EGV 322
>02_01_0729 -
5465521-5466005,5466481-5466793,5466878-5467094,
5467797-5468116
Length = 444
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +2
Query: 26 SIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLL 199
S I D SL WG S G+LG+G+ A P V + + I +V+ G+ H + L
Sbjct: 134 SAAIGCDGSLWVWGRSKR-GQLGLGKDIVEAAVPSRVEALANYDIVKVSFGWGHAMAL 190
Score = 35.1 bits (77), Expect = 0.052
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +2
Query: 26 SIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLL 199
S+ + + + AWG S G LG+G + +P + ++ ++QVA G HTLLL
Sbjct: 386 SVALTSKGEVWAWG-SGRNGRLGLGS-SMDEPEPFLIDTLEGAEVSQVAAGMDHTLLL 441
>04_04_0927 +
29467121-29467168,29467518-29467604,29468180-29468269,
29468547-29468741,29469056-29471080,29471208-29471354,
29471520-29471923,29472015-29472144
Length = 1041
Score = 32.3 bits (70), Expect = 0.37
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +2
Query: 32 VIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCD 205
+I + L +G T+G LG G+ + A+PKEV + + VA G HT + +
Sbjct: 383 IITSSGQLFTYG-DGTFGVLGHGD-TQGVARPKEVESLKGSRVKSVACGPWHTAAIVE 438
>04_03_1008 +
21691299-21691413,21691524-21691863,21692344-21692425,
21692905-21693060,21694171-21694344,21694485-21694556,
21695289-21695360,21695473-21695591,21695692-21695777,
21695867-21695919,21696058-21696150
Length = 453
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = +2
Query: 26 SIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTL 193
++ + +D L WG + +G++G+G+ + P +V + + QVA G+ HTL
Sbjct: 297 TMALTSDGKLYGWGWNK-FGQVGVGDTDDHCF-PVQVKFPEDQKVAQVACGWRHTL 350
>01_07_0288 +
42534552-42534558,42535302-42537280,42537367-42537513,
42537982-42538526,42538906-42538981,42539357-42539437
Length = 944
Score = 31.9 bits (69), Expect = 0.49
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +2
Query: 5 SVGTSNTSIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYS 184
S GT +T+++ L +G T+G LG G +S + PKEV + L VA G
Sbjct: 215 SCGTWHTALITTMGQ-LFTFG-DGTFGVLGHGN-RESISCPKEVESLSGLKTISVACGVW 271
Query: 185 HTLLLCD 205
HT + +
Sbjct: 272 HTAAIVE 278
>05_01_0048 +
331155-333077,333208-333354,333540-334087,334481-334616
Length = 917
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = +2
Query: 5 SVGTSNTSIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYS 184
S GT +T+++ + L +G ++G LG G + S + PKEV + L VA G
Sbjct: 190 SCGTWHTALITSMGQ-LFTFG-DGSFGVLGHGNLT-SISCPKEVESLSGLKTIAVACGVW 246
Query: 185 HTLLLCD 205
HT + +
Sbjct: 247 HTAAIVE 253
>02_05_0336 +
28033315-28033365,28033580-28033585,28033798-28033884,
28034741-28034830,28035736-28037778,28037916-28038062,
28038148-28038560,28038656-28038755
Length = 978
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +2
Query: 32 VIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCD 205
+I++ L A+G T+G LG G+ + A+PK+V + + +A G HT + +
Sbjct: 326 IISSAGQLFAYG-DGTFGVLGHGD-TLTVARPKQVESLKGVRAKAIACGPWHTAAIVE 381
>05_04_0149 -
18441561-18442082,18442723-18442861,18443295-18443352,
18443630-18443664,18444528-18444886,18445304-18445450,
18445849-18447954,18448300-18448494,18448629-18448709,
18448758-18448874,18449281-18449370,18449466-18449552,
18450293-18450315,18450675-18450804
Length = 1362
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/62 (33%), Positives = 33/62 (53%)
Frame = +2
Query: 5 SVGTSNTSIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYS 184
S G +T+IV +A L +G ++G LG G+ +S + P+EV + L + A G
Sbjct: 491 SCGPWHTAIVTSAGQ-LFTFG-DGSFGVLGHGD-RQSLSVPREVESLKGLRTVRAACGVW 547
Query: 185 HT 190
HT
Sbjct: 548 HT 549
>01_06_0910 -
32922459-32922646,32922725-32922823,32923371-32923502,
32923585-32923743,32924553-32924711,32924897-32925052,
32925846-32926044
Length = 363
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +2
Query: 77 TYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCDNN 211
++G+LG G+ N P EV+ + + ++A+G H+L+L +N
Sbjct: 130 SFGQLGAGD-NHPRNLPFEVAYFTTKHVVRLALGMRHSLVLLKDN 173
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 149 SLGITQVAMGYSHTLLLCDNNIEEVKQKLDTI 244
SLGI+QVA+G+ H L+L +++ K+ +
Sbjct: 251 SLGISQVALGWHHALVLSESSSSSTLVKVPCV 282
>09_06_0094 - 20831530-20831997
Length = 155
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 86 PHKLVIHPKQSVSRPLLLLWMCYL-CRH 6
PH L++ P +S PL L W+C L RH
Sbjct: 123 PHHLLLQPYESRDVPLPLSWLCLLSIRH 150
>01_06_1078 +
34378985-34380064,34380155-34380283,34380362-34380430,
34380536-34380588,34381309-34381421,34381565-34382132,
34382520-34382580,34382624-34382665
Length = 704
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 191 LLLCDNNIEEVKQKLDTIPAFDHRPRVTNLL 283
+L D+ IE +K+ L + AFD+RP + +L
Sbjct: 368 ILRIDSEIEYMKKMLSEVCAFDYRPAIMPIL 398
>10_05_0065 + 8736744-8738879
Length = 711
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 181 ITHGDLGYAEAIHTAHFFRLGCRLIYLAHAQF 86
+ HG+L A A+H H L C ++ A+F
Sbjct: 203 LRHGELDRARAVHERHVAALPCADAFILFAEF 234
>07_01_0466 - 3518315-3521428
Length = 1037
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +1
Query: 463 CFFITLSLYSIPLK*IKIVLALIHKRKLLFQ 555
C F+ ++LY +P+K + +V + R +F+
Sbjct: 985 CVFVAMALYVVPIKVVAVVAGFYYLRHPMFR 1015
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,900,722
Number of Sequences: 37544
Number of extensions: 373046
Number of successful extensions: 629
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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