Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0239
(684 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46796| Best HMM Match : RCC1 (HMM E-Value=3e-14) 71 7e-13
SB_17186| Best HMM Match : RCC1 (HMM E-Value=1.5e-19) 44 9e-05
SB_2363| Best HMM Match : RCC1 (HMM E-Value=0.00041) 44 9e-05
SB_32347| Best HMM Match : RCC1 (HMM E-Value=0.00072) 42 4e-04
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34) 37 0.013
SB_7970| Best HMM Match : RCC1 (HMM E-Value=0) 33 0.22
SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26) 32 0.50
SB_18907| Best HMM Match : RCC1 (HMM E-Value=0) 31 0.66
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.66
SB_25012| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_45106| Best HMM Match : Adeno_E3B (HMM E-Value=1.1) 29 2.7
SB_31780| Best HMM Match : Pkinase (HMM E-Value=0) 29 4.6
>SB_46796| Best HMM Match : RCC1 (HMM E-Value=3e-14)
Length = 350
Score = 71.3 bits (167), Expect = 7e-13
Identities = 38/86 (44%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Frame = +2
Query: 5 SVGTSNTSIVIAADDSLIAWGVSPTYGELGMG---EINKSTAKPKEVSRMDSLGITQVAM 175
SVG S +SIVIAADDS+++WG SPTYGELG G KS+ PK V ++ + + V
Sbjct: 260 SVGCSKSSIVIAADDSVVSWGPSPTYGELGYGLKKGGQKSSTNPKIVEPLEDIYVHSVTC 319
Query: 176 GYSHTLLLCDNNIEEVKQKLDTIPAF 253
G HTL + + E K L P +
Sbjct: 320 GMGHTLFIAKDVTPEDKTMLGKKPVY 345
>SB_17186| Best HMM Match : RCC1 (HMM E-Value=1.5e-19)
Length = 637
Score = 44.4 bits (100), Expect = 9e-05
Identities = 21/63 (33%), Positives = 37/63 (58%)
Frame = +2
Query: 5 SVGTSNTSIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYS 184
SVG S+ + + D+++ AWG + + G+ G G KPK+V +D + + Q++ G S
Sbjct: 568 SVGDSHC-VALTQDNNVYAWG-NNSMGQCGQGHCTTPITKPKKVLGLDGVAVHQISAGTS 625
Query: 185 HTL 193
HT+
Sbjct: 626 HTV 628
>SB_2363| Best HMM Match : RCC1 (HMM E-Value=0.00041)
Length = 234
Score = 44.4 bits (100), Expect = 9e-05
Identities = 21/63 (33%), Positives = 37/63 (58%)
Frame = +2
Query: 5 SVGTSNTSIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYS 184
SVG S+ + + D+++ AWG + + G+ G G KPK+V +D + + Q++ G S
Sbjct: 65 SVGDSHC-VALTQDNNVYAWG-NNSMGQCGQGHCTTPITKPKKVLGLDGVAVHQISAGTS 122
Query: 185 HTL 193
HT+
Sbjct: 123 HTV 125
>SB_32347| Best HMM Match : RCC1 (HMM E-Value=0.00072)
Length = 677
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +2
Query: 26 SIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLL 199
S+ ++AD + +WG +G+LG+ I + P V+ + +TQ+A GYSHT +L
Sbjct: 79 SLALSADQQVYSWGWG-VHGQLGLDSIEDALL-PSHVTSLSGAFVTQLAAGYSHTAVL 134
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 80 YGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCDNNIEEVKQKLDTIPAF 253
+G+L + E KS E+ M + + VA G HTL LC + + + + T P +
Sbjct: 4 HGDL-IEEEGKSMPFRVEILHMHRIKVLSVACGIEHTLALCRDGLGQGDTQQHTRPVY 60
>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
Length = 1790
Score = 37.1 bits (82), Expect = 0.013
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 11 GTSNTSIVIAADDSLI-AWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSH 187
G+ + + AADD + +WG YG+LG G + PK + R+ LG+ +V G
Sbjct: 655 GSGDAHTLAAADDGTVWSWG-DGDYGKLGRGG-SDGCKNPKSIERLQGLGVCKVYCGAQF 712
Query: 188 TLLL 199
+L L
Sbjct: 713 SLAL 716
>SB_7970| Best HMM Match : RCC1 (HMM E-Value=0)
Length = 651
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = +2
Query: 26 SIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLL 199
S+ I AD ++ +WG +G+LG G+ + PK++ L + V+ G +H+L +
Sbjct: 400 SLAIIADGAVWSWGFG-YHGQLGHGD-QQIQLLPKQIEAFAGLRVVAVSAGAAHSLAI 455
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 29 IVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLL 199
+ + AD ++ +WG G LG G+ PK+V + V+ GY H+L L
Sbjct: 89 LALTADGAVWSWGHGGQ-GRLGHGDAQHQLL-PKKVEAFAGQRVVAVSAGYFHSLAL 143
>SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)
Length = 1362
Score = 31.9 bits (69), Expect = 0.50
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = +2
Query: 26 SIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCD 205
++ +++ ++ AWG+ + G G +N ++PK V + + + G H++ L
Sbjct: 178 TLALSSRGTVWAWGLGC---QTGHGSLNSIVSRPKMVEALKDKEVIGIICGAYHSIALIT 234
Query: 206 NNIEEVK 226
+N E+K
Sbjct: 235 DNTMEIK 241
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +2
Query: 83 GELGMGEINKSTAKPKEVSRMD-SLGITQVAMGYSHTLLLCDNN 211
GE G+ +ST+ ++S + GI++VA+G +HT+LL N+
Sbjct: 12 GEKGIAFFWQSTSPEPKISPLSLPHGISKVALGTAHTVLLTFNH 55
>SB_18907| Best HMM Match : RCC1 (HMM E-Value=0)
Length = 444
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 80 YGELGMGEINKSTAKPKEVSRMDSLGITQVAMG 178
YG LG+G+ K TA P ++ +D+ I +VA G
Sbjct: 343 YGRLGLGDGAKETALPAHITSLDNEVIEKVACG 375
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 31.5 bits (68), Expect = 0.66
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +2
Query: 5 SVGTSNTSIVIAADDSLI-AWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGY 181
++ T + V + D + WG + G+LG G N + A+P+ V+ + I++VA G
Sbjct: 2681 TIATGSLHCVASTDTGEVYTWGDNDE-GQLGDGTTN-AIARPRLVTALQGKKISRVACGS 2738
Query: 182 SHTL 193
+HT+
Sbjct: 2739 AHTI 2742
>SB_25012| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 436
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +2
Query: 53 LIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCD 205
+ WG + Y +LG G N+ P ++ ITQ+A G HTL+L D
Sbjct: 115 VFTWGHNG-YSQLGNGNTNQGLY-PSLLTSFQGKNITQLACGSHHTLVLND 163
>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2408
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +2
Query: 20 NTSIVIAADDSLIAWGVSP-TYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLL 196
N ++V++AD + + W YG+LG+G T+ P+ + + +G ++ G +++
Sbjct: 1715 NHTLVLSADGNTV-WAFGDGDYGKLGLGSCTAKTS-PQAIDVLAGIGCKKICCGTQFSVV 1772
Query: 197 LCDN 208
L ++
Sbjct: 1773 LTND 1776
>SB_45106| Best HMM Match : Adeno_E3B (HMM E-Value=1.1)
Length = 234
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 298 DDHQQEQIGYAGSMVECGDSVQFLLNFFYIVIAQEECVR 182
D++QQ + Y +++ G V FLL ++V C R
Sbjct: 41 DEYQQSLVLYGSAIIVIGSVVSFLLFIHFLVFCAATCCR 79
>SB_31780| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 964
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 134 VSRMDSLGITQVAMGYSHTLLLCDN 208
V +S+G + VAMG SHTL+L N
Sbjct: 577 VPDFNSVGTSSVAMGTSHTLVLLQN 601
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,430,493
Number of Sequences: 59808
Number of extensions: 448239
Number of successful extensions: 776
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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