Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0239
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical...    41   0.001
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    36   0.036
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ...    36   0.036
U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule los...    33   0.25 
AC025716-18|AAT81178.1|  998|Caenorhabditis elegans Hypothetical...    31   1.0  
U53149-1|AAD31546.1|  328|Caenorhabditis elegans Prion-like-(q/n...    27   9.4  
AL023856-6|CAC15864.1|  332|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.1 protein.
          Length = 1019

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/57 (33%), Positives = 36/57 (63%)
 Frame = +2

Query: 29  IVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLL 199
           + ++A  ++  WG + + GELG+ ++   T+  + V +MD LG+ + A G +HT+LL
Sbjct: 203 LALSASGAVFTWGQNNS-GELGIDDLRPQTSV-QHVHQMDGLGVVEAACGDNHTVLL 257



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 71  SPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLC 202
           S   G+ G G+  +    P  VS +    +T++A G  HT+ +C
Sbjct: 268 SDALGQCGFGKKVEKRTNPTAVSDLIGSHVTRIAAGACHTIAIC 311



 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 62  WGVSPTY-GELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCDN 208
           W V     G+LG G   + +     VS   S  I Q++ G SHT+ + D+
Sbjct: 63  WSVGSNMDGQLGRGSRTEGSFSIYPVSWTSSAKIIQISAGRSHTVSVTDD 112


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
           presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = +2

Query: 5   SVGTSNTSIVIAADDSLIAWGVSPTYGELGMGE-INKSTAKPKEVSRMDSLGITQVAMGY 181
           SV   N   V+ A D  +    S  +G+LG+G+ ++K+T  P++V       I QVA G 
Sbjct: 771 SVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNT--PQQVILPSDTVIVQVAAGS 828

Query: 182 SHTLL 196
           +HT+L
Sbjct: 829 NHTIL 833


>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
           protein F07B7.12 protein.
          Length = 1900

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = +2

Query: 5   SVGTSNTSIVIAADDSLIAWGVSPTYGELGMGE-INKSTAKPKEVSRMDSLGITQVAMGY 181
           SV   N   V+ A D  +    S  +G+LG+G+ ++K+T  P++V       I QVA G 
Sbjct: 771 SVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNT--PQQVILPSDTVIVQVAAGS 828

Query: 182 SHTLL 196
           +HT+L
Sbjct: 829 NHTIL 833


>U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule loss
            protein 4 protein.
          Length = 1392

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = +2

Query: 26   SIVIAADDSL--IAWGVSPTYGELGMGEINKSTAK-PKEVSRMDSLGITQVAMGYSHTLL 196
            S  I +D SL    WGV   +G+LG G  N S    P  V+ +    +TQ+A G +HT++
Sbjct: 839  SAFICSDGSLWTFGWGV---WGQLGHGGRNNSNQLVPTRVNGL-ICKVTQIACGRAHTVV 894

Query: 197  LCD 205
            L D
Sbjct: 895  LTD 897


>AC025716-18|AAT81178.1|  998|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.3 protein.
          Length = 998

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +2

Query: 5   SVGTSNTSIVIAAD-DSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGY 181
           SVG  N   VI  D  +L+ +G   T   LG+G+  K +AKP  + ++    I  +  G+
Sbjct: 523 SVGVGNYFSVICCDRGTLLTFG---TAKNLGLGKDAKDSAKPMLLEQLLRENIKDIYCGH 579

Query: 182 SHTLLLCDN 208
            H + + ++
Sbjct: 580 DHVVAVLES 588


>U53149-1|AAD31546.1|  328|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 16
           protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 507 NKNCTCINTQTETIISNC 560
           ++ CTC NTQ  T  SNC
Sbjct: 46  SQTCTCHNTQQSTSASNC 63


>AL023856-6|CAC15864.1|  332|Caenorhabditis elegans Hypothetical
           protein Y94A7B.9 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -1

Query: 165 WVMPRLSIRLTSLGLAVDLFISPMPNSP*VGDTPQAISESSAAITMDVLLV 13
           W +  L +   +L +++ LFI P   SP     P  I +    I MDVL+V
Sbjct: 47  WSLFNLYLWSFALDISLSLFIQPYFCSPAFAGFPLGIVQWVKGIPMDVLVV 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,188,416
Number of Sequences: 27780
Number of extensions: 352436
Number of successful extensions: 654
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)