Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0239
(684 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g69710.1 68414.m08022 zinc finger protein, putative / regulat... 40 0.002
At1g27060.1 68414.m03299 regulator of chromosome condensation (R... 37 0.014
At1g65920.1 68414.m07480 regulator of chromosome condensation (R... 35 0.058
At5g60870.2 68418.m07635 regulator of chromosome condensation (R... 34 0.076
At5g60870.1 68418.m07636 regulator of chromosome condensation (R... 34 0.076
At5g48330.1 68418.m05970 regulator of chromosome condensation (R... 34 0.10
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 32 0.41
At5g19420.1 68418.m02314 zinc finger protein, putative / regulat... 31 0.94
At5g12350.1 68418.m01453 zinc finger protein, putative / regulat... 31 0.94
At3g23270.1 68416.m02933 regulator of chromosome condensation (R... 29 3.8
At5g08710.1 68418.m01035 regulator of chromosome condensation (R... 28 6.6
At5g61940.1 68418.m07775 ubiquitin carboxyl-terminal hydrolase-r... 27 8.8
>At1g69710.1 68414.m08022 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1028
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/70 (32%), Positives = 40/70 (57%)
Frame = +2
Query: 32 VIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCDNN 211
V+A+ L +G T+G LG G+ +ST+ P+EV + L +T+VA G HT + +
Sbjct: 408 VVASSGQLFTFG-DGTFGALGHGD-RRSTSVPREVESLIGLIVTKVACGVWHTAAVVEVT 465
Query: 212 IEEVKQKLDT 241
E + ++D+
Sbjct: 466 NEASEAEVDS 475
Score = 30.7 bits (66), Expect = 0.94
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 26 SIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHT 190
++++ + +WG G+LG G + KPK +S + LG +A G HT
Sbjct: 299 AVLVTKQGEIFSWGEGKG-GKLGHG-LETDAQKPKFISSVRGLGFKSLACGDFHT 351
>At1g27060.1 68414.m03299 regulator of chromosome condensation
(RCC1) family protein low similiarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 386
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/60 (36%), Positives = 32/60 (53%)
Frame = +2
Query: 29 IVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCDN 208
I + + + WG + G+LG G+I T PK VS D ITQ A G+SH+ + D+
Sbjct: 61 IALTSGGKVFTWGRGSS-GQLGHGDILNITL-PKLVSFFDDSVITQAAAGWSHSGFVSDS 118
>At1g65920.1 68414.m07480 regulator of chromosome condensation
(RCC1) family protein / zinc finger protein-related
contains Pfam profiles: regulator of chromosome
condensation (RCC1), PF01363 FYVE zinc finger
Length = 1006
Score = 34.7 bits (76), Expect = 0.058
Identities = 22/65 (33%), Positives = 36/65 (55%)
Frame = +2
Query: 11 GTSNTSIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHT 190
G +T+IV ++ L +G S T+G LG G + +S KPKEV + + + V+ G HT
Sbjct: 403 GAWHTAIVTSSGQ-LFTYG-SGTFGVLGHGSL-ESVTKPKEVESLRRMKVISVSCGPWHT 459
Query: 191 LLLCD 205
+ +
Sbjct: 460 AAIVE 464
>At5g60870.2 68418.m07635 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 383
Score = 34.3 bits (75), Expect = 0.076
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +2
Query: 26 SIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCD 205
++ + + L WG + Y ELG G+ N +P V ++ + ITQ+A G H+L L +
Sbjct: 205 TMALTKEGQLWNWGANSNY-ELGRGD-NLGGWEPMPVPSLEGVRITQIACGGYHSLALTE 262
>At5g60870.1 68418.m07636 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 445
Score = 34.3 bits (75), Expect = 0.076
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +2
Query: 26 SIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCD 205
++ + + L WG + Y ELG G+ N +P V ++ + ITQ+A G H+L L +
Sbjct: 274 TMALTKEGQLWNWGANSNY-ELGRGD-NLGGWEPMPVPSLEGVRITQIACGGYHSLALTE 331
>At5g48330.1 68418.m05970 regulator of chromosome condensation
(RCC1) family protein contains Pfam PF00415:Regulator of
chromosome condensation (RCC1) domain (5 copies);
similar to UVB-resistance protein UVR8 (GI:5478530)
{Arabidopsis thaliana)
Length = 455
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +2
Query: 26 SIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLL 199
S I D SL WG S G+LG+G P V + + + +V++G+ H L L
Sbjct: 150 SAAIGDDGSLWVWGRSKR-GQLGLGNGIIEARVPSRVENLAAEHVVKVSLGWGHALAL 206
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
to disease resistance protein RPP1-WsB (GI:3860165)
[Arabidopsis thaliana]
Length = 1996
Score = 31.9 bits (69), Expect = 0.41
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 26 SIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCD 205
S + A+ L +G +G LG G+ +S + PKEV + L +VA G HT+ + +
Sbjct: 1321 SALATANGKLFTFG-DGAFGVLGHGD-RESVSYPKEVKMLSGLKTLKVACGVWHTVAIVE 1378
>At5g19420.1 68418.m02314 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1124
Score = 30.7 bits (66), Expect = 0.94
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +2
Query: 11 GTSNTSIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHT 190
G +T++V +A L +G T+G LG G+ KS P+EV + L + A G HT
Sbjct: 444 GPYHTAVVTSAGQ-LFTFG-DGTFGVLGHGD-RKSVFIPREVDSLKGLRTVRAACGVWHT 500
>At5g12350.1 68418.m01453 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1062
Score = 30.7 bits (66), Expect = 0.94
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +2
Query: 11 GTSNTSIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHT 190
G +T++V +A L +G T+G LG G+ KS P+EV + L + A G HT
Sbjct: 408 GPYHTAVVTSAGQ-LFTFG-DGTFGVLGHGD-KKSVFIPREVDSLKGLRTVRAACGVWHT 464
>At3g23270.1 68416.m02933 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1); similar to
zinc finger protein (GI:15811367) [Arabidopsis
thaliana]; similar to chromosome condensation regulator
protein (GI:22770461) [Cicer arietinum]
Length = 1045
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +2
Query: 26 SIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCD 205
S + A+ L +G +G LG G +S + PKEV ++ L +VA HT + +
Sbjct: 370 SALATANGKLFTFG-DGAFGVLGHGN-RESVSYPKEVQSLNGLKTVKVACSIWHTAAIVE 427
>At5g08710.1 68418.m01035 regulator of chromosome condensation
(RCC1) family protein / UVB-resistance protein-related
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to UVB-resistance protein
UVR8 (GI:10177674) {Arabidopsis thaliana}
Length = 434
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 83 GELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHT 190
G+LG+ ++ P EVS +D I ++ GY H+
Sbjct: 112 GQLGVSDVKSHAMDPLEVSGLDK-DILHISAGYYHS 146
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +2
Query: 32 VIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCDNN 211
V+ L WG S G LG S + + ++QV+ G+ HT + DNN
Sbjct: 313 VVTRGGELYTWG-SNENGCLGTDSTYVSHSPVRVEGPFLESTVSQVSCGWKHTAAISDNN 371
Query: 212 I 214
+
Sbjct: 372 V 372
>At5g61940.1 68418.m07775 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1094
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +2
Query: 107 NKSTAKPKEVSRMDSLG--ITQVAMGYSHTLLLCDNNIEEVKQKLDTIPAFDHRPRVTNL 280
+KS + K + +D L +TQ + +LL DN+ + L + AFD+R + L
Sbjct: 635 HKSLSDDKVLQAIDLLKSVVTQKVLLMDTKILLIDNSRMSLLNNLTRLSAFDNRTYILQL 694
Query: 281 L 283
L
Sbjct: 695 L 695
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,003,461
Number of Sequences: 28952
Number of extensions: 318282
Number of successful extensions: 575
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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