Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0238
(723 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 114 1e-26
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 114 1e-26
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 27 2.7
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 27 3.6
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 26 4.7
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 26 6.3
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 26 6.3
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 25 8.3
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 8.3
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 25 8.3
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 114 bits (275), Expect = 1e-26
Identities = 54/91 (59%), Positives = 56/91 (61%)
Frame = +3
Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXX 434
QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 61 QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEK 120
Query: 435 XXXXXXXXXXXXXXXXXQARGHIIERFPIFP 527
ARGH IE P P
Sbjct: 121 RYAIASAVAASGVPSLLLARGHRIEEIPEVP 151
Score = 97.9 bits (233), Expect = 1e-21
Identities = 41/71 (57%), Positives = 58/71 (81%)
Frame = +2
Query: 509 KIPDLPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRK 688
+IP++PLVV D VQ KTK+AV L+ +KA+ D++KV S++LRAGKGK+RNRR +QR+
Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRR 205
Query: 689 GPLIIFNKDQG 721
GPL++FN+D G
Sbjct: 206 GPLVVFNEDTG 216
Score = 77.4 bits (182), Expect = 2e-15
Identities = 35/62 (56%), Positives = 46/62 (74%)
Frame = +1
Query: 73 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 252
++ ARP VS+Y+ K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 253 HK 258
H+
Sbjct: 60 HQ 61
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 114 bits (275), Expect = 1e-26
Identities = 54/91 (59%), Positives = 56/91 (61%)
Frame = +3
Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXX 434
QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 61 QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEK 120
Query: 435 XXXXXXXXXXXXXXXXXQARGHIIERFPIFP 527
ARGH IE P P
Sbjct: 121 RYAISSAVAASGVPSLLLARGHRIEEIPEVP 151
Score = 97.5 bits (232), Expect = 2e-21
Identities = 41/71 (57%), Positives = 58/71 (81%)
Frame = +2
Query: 509 KIPDLPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRK 688
+IP++PLVV D VQ KTK+AV L+ +KA+ D++KV S++LRAGKGK+RNRR +QR+
Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRR 205
Query: 689 GPLIIFNKDQG 721
GPL++FN+D G
Sbjct: 206 GPLVVFNEDAG 216
Score = 78.2 bits (184), Expect = 1e-15
Identities = 36/62 (58%), Positives = 46/62 (74%)
Frame = +1
Query: 73 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 252
++ ARP VS+YS K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 253 HK 258
H+
Sbjct: 60 HQ 61
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 2.7
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Frame = +1
Query: 76 SVARPLVSVYSEKS-ETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS---K 243
SVA P S + T +A PL + ++P ND + S S +S P S
Sbjct: 381 SVASPAFPNSSTSNPSTAPASASPLA----STLKPSTANDTNGSSSSSSSNPRTSSPLAS 436
Query: 244 EAGHKPVPNHGVPDVLLP 297
A +KP P VLLP
Sbjct: 437 NAENKPPVAQQSPPVLLP 454
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -2
Query: 518 RESFNNVSSSLNERWDASSSNGCCQGRSPLSEVDATVPAPP 396
R+S V+ N W + + GC G L + A + PP
Sbjct: 178 RDSTRQVTIVPNRHWGGNGAIGCGVGHGVLHRLPAPLSGPP 218
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 134 APCTVSLFSEYTDTKGRATDRLISLL 57
A C V ++SEYT G ++ L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 72 SIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGP 182
SI SP+ SVG + D + S + P+ I G + P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 147 PVRIQGAHTSGPGQ*CSRFYVQELEAALLREQ 242
PV +QG HT G +F Q L A +L Q
Sbjct: 29 PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -2
Query: 536 LQPREDRESFNNVSSSLNERWDASSSNGCCQGRSPLSEVDATVPAPP 396
++P + +S NN +++ S +G + + E+D T P PP
Sbjct: 1 MEPIQKMDSLNNKEGQPDKKRKKHESEK--EGENEVLEIDVTKPVPP 45
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +2
Query: 515 PDLPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKG 655
PD + + Q+ +K + +L+ W D L Y+ +R AG G
Sbjct: 1277 PDAAIGILKHAQQHDKMNLKETWYEKLQRWEDALSAYE-KREAAGAG 1322
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -2
Query: 554 SPGLCRLQPREDRESFNNVSSSLNERWDASSSNGCCQG 441
SP + + P ED+E+ NN+ +++ ++ +NG +G
Sbjct: 642 SPTVFQTSPEEDKENVNNI--KISQPRNSLQTNGYIEG 677
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,245
Number of Sequences: 5004
Number of extensions: 55749
Number of successful extensions: 174
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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